Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACNQFN_RS19645 Genome accession   NZ_CP183038
Coordinates   4055408..4056808 (-) Length   466 a.a.
NCBI ID   WP_068635959.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4050408..4061808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS19625 (ACNQFN_19625) ahpF 4051237..4052805 (-) 1569 WP_068635985.1 alkyl hydroperoxide reductase subunit F -
  ACNQFN_RS19630 (ACNQFN_19630) ahpC 4052934..4053497 (-) 564 WP_418647343.1 alkyl hydroperoxide reductase subunit C -
  ACNQFN_RS19635 (ACNQFN_19635) ftsX 4053725..4054621 (-) 897 WP_418647344.1 permease-like cell division protein FtsX -
  ACNQFN_RS19640 (ACNQFN_19640) - 4054701..4055411 (-) 711 WP_418647345.1 cell division ATP-binding protein FtsE -
  ACNQFN_RS19645 (ACNQFN_19645) pilA 4055408..4056808 (-) 1401 WP_068635959.1 signal recognition particle-docking protein FtsY Machinery gene
  ACNQFN_RS19650 (ACNQFN_19650) - 4056973..4058355 (+) 1383 WP_418647346.1 M16 family metallopeptidase -
  ACNQFN_RS19655 (ACNQFN_19655) - 4058399..4059757 (+) 1359 WP_418647347.1 M16 family metallopeptidase -
  ACNQFN_RS19660 (ACNQFN_19660) rsmD 4059754..4060293 (+) 540 WP_068635961.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACNQFN_RS19665 (ACNQFN_19665) coaD 4060290..4060781 (+) 492 WP_068635962.1 pantetheine-phosphate adenylyltransferase -
  ACNQFN_RS19670 (ACNQFN_19670) - 4060798..4061046 (+) 249 WP_068635963.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 48104.45 Da        Isoelectric Point: 4.4409

>NTDB_id=1103746 ACNQFN_RS19645 WP_068635959.1 4055408..4056808(-) (pilA) [Thauera butanivorans strain TB]
MFGFLKKKFGKTGQTEAGQPPAEDVAEQVSADAVADVAPEAEQEVVALEVPAEATEAPAGMQADEAEPAAAVPSADVGPA
VETGPEAAAGPVAETAVLPPAAETAGPATAGDSASAVEPGPLETPAVAEAAEPVVPADEPAVPAAAEAPAKRSWTDRLKA
GLARTRQQLGGGLASLFGRRKIDEDLLEELESTLLMADCGVEATQHLIDDLRLRWKRDRLETADQLQKALADGLQAIVAP
LEEPLDAGTHKPFVIMIAGVNGAGKTTSIGKLAKHFQAQGKSVLLAAGDTFRAAAREQLMTWGERNNVTVVAQDGGDAAA
VIFDAINAARARNIDIVLADTAGRLPTQLHLMEEIAKVRRVIAKADPSGPHEVLLVLDANIGQNALAQVKAFDKAVGVTG
LVVTKLDGTAKGGVLAAIARQCPKPLRFIGVGEGIDDLQPFKAREFVDALFEPAAGAARNGEGERA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1103746 ACNQFN_RS19645 WP_068635959.1 4055408..4056808(-) (pilA) [Thauera butanivorans strain TB]
ATGTTTGGTTTCCTGAAGAAGAAGTTCGGCAAGACCGGGCAAACCGAAGCCGGCCAGCCGCCGGCCGAGGATGTTGCCGA
GCAGGTATCGGCCGATGCCGTCGCCGATGTCGCCCCCGAAGCAGAGCAAGAAGTCGTCGCCCTGGAGGTGCCGGCGGAAG
CCACCGAAGCGCCTGCGGGGATGCAGGCGGATGAGGCAGAGCCGGCCGCAGCCGTGCCGTCTGCCGATGTCGGGCCCGCC
GTCGAAACCGGGCCCGAAGCCGCGGCTGGACCCGTAGCCGAAACCGCGGTCCTGCCGCCGGCCGCCGAGACCGCCGGGCC
TGCGACCGCTGGCGATTCTGCAAGCGCCGTCGAGCCCGGGCCGCTGGAAACGCCGGCTGTTGCCGAAGCCGCCGAGCCCG
TGGTGCCCGCCGATGAGCCTGCCGTCCCGGCAGCCGCCGAAGCGCCGGCCAAGCGCTCCTGGACCGACCGCCTCAAGGCC
GGCCTGGCCCGCACCCGGCAGCAGCTGGGCGGCGGCCTGGCGAGCCTGTTCGGTCGCCGCAAGATCGACGAAGATCTGCT
GGAGGAACTCGAATCGACGCTGCTGATGGCCGATTGCGGTGTCGAGGCCACCCAGCACCTGATCGACGACCTGCGCCTGC
GCTGGAAGCGCGACCGGCTGGAAACCGCCGACCAGTTGCAGAAGGCGCTGGCCGACGGCCTGCAGGCCATCGTCGCGCCG
CTCGAAGAGCCGCTCGACGCCGGCACCCACAAGCCCTTCGTGATCATGATCGCGGGTGTCAACGGCGCCGGCAAGACGAC
TTCGATCGGCAAGCTGGCCAAGCATTTCCAGGCCCAGGGCAAGAGCGTGCTGCTGGCTGCCGGCGACACCTTCCGCGCCG
CGGCGCGCGAGCAGCTGATGACCTGGGGCGAGCGCAACAATGTCACCGTGGTGGCGCAGGACGGCGGCGATGCCGCGGCG
GTGATCTTCGATGCGATCAACGCCGCGCGCGCGCGCAACATCGACATCGTGCTGGCCGATACCGCCGGCCGGCTGCCGAC
CCAGCTCCACCTGATGGAAGAGATCGCCAAGGTCAGGCGCGTCATCGCCAAGGCCGACCCGAGCGGCCCGCACGAGGTGC
TGCTGGTGCTCGACGCCAACATCGGCCAGAACGCGCTGGCCCAGGTCAAGGCCTTCGACAAGGCGGTCGGCGTCACCGGC
CTGGTCGTGACCAAGCTCGACGGCACCGCCAAGGGCGGCGTGTTGGCGGCGATCGCCCGCCAGTGCCCGAAGCCTTTGCG
CTTCATCGGCGTCGGCGAAGGCATCGACGACCTGCAGCCGTTCAAGGCGCGGGAGTTCGTCGATGCGCTGTTCGAGCCCG
CCGCGGGCGCGGCCAGGAACGGAGAAGGCGAACGCGCATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(169-233)

SRP54-type protein, GTPase domain (SRP54)

(252-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.068

88.412

0.496

Multiple sequence alignment