Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACNQFN_RS18275 Genome accession   NZ_CP183038
Coordinates   3793595..3795001 (-) Length   468 a.a.
NCBI ID   WP_418647200.1    Uniprot ID   -
Organism   Thauera butanivorans strain TB     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3788595..3800001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNQFN_RS18255 (ACNQFN_18255) - 3789170..3790495 (-) 1326 WP_068638452.1 DUF1302 family protein -
  ACNQFN_RS18260 (ACNQFN_18260) - 3790504..3791253 (-) 750 WP_068638450.1 ABC transporter ATP-binding protein -
  ACNQFN_RS18265 (ACNQFN_18265) - 3791299..3792114 (+) 816 WP_245650964.1 outer membrane lipoprotein-sorting protein -
  ACNQFN_RS18270 (ACNQFN_18270) - 3792182..3793591 (+) 1410 WP_418647199.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  ACNQFN_RS18275 (ACNQFN_18275) pilR 3793595..3795001 (-) 1407 WP_418647200.1 sigma-54-dependent transcriptional regulator Regulator
  ACNQFN_RS18280 (ACNQFN_18280) - 3794998..3796566 (-) 1569 WP_418647201.1 sensor histidine kinase -
  ACNQFN_RS18285 (ACNQFN_18285) - 3796568..3797023 (-) 456 WP_418647202.1 PP0621 family protein -
  ACNQFN_RS18290 (ACNQFN_18290) - 3797015..3798184 (+) 1170 WP_418647203.1 pyridoxal phosphate-dependent aminotransferase -
  ACNQFN_RS18295 (ACNQFN_18295) mtnA 3798209..3799276 (+) 1068 WP_418647204.1 S-methyl-5-thioribose-1-phosphate isomerase -
  ACNQFN_RS18300 (ACNQFN_18300) - 3799273..3799962 (+) 690 WP_418647205.1 class II aldolase/adducin family protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 51162.65 Da        Isoelectric Point: 5.8459

>NTDB_id=1103744 ACNQFN_RS18275 WP_418647200.1 3793595..3795001(-) (pilR) [Thauera butanivorans strain TB]
MSIHERRHRPASVDVLVVDDEDDIRELLELSLLRMGLGCDTAGSVAEARACLEQRRYRLCLTDMRLPDGEGFELVEYIQQ
HLPGLPVAVITAFGSIDTAIRALKLGAFDFVTKPIELKVLRELVSHALKLEPGAGADAPDGRRLIGASPAFQQLRSQAEK
LARNQAPVFIHGESGTGKEVIARLIHALGARANGPFVPVNCGAISPELMESEFFGHRKGSFTGAASDKEGLFQAARGGTL
FLDEIGELPLPMQVKLLRALQERAVRPVGAHAEEAVDVRILSASHQDLARLVAEGRFRQDLFFRINVITLRVPPLRERSE
DIPALAEHILARVAEREGTTPRRLSPAAQAALQRHSFPGNVRELENLLERACALCEGDEIGVEDIDLLPVEFASPVAAVP
AAMSGPGAAVEPGMADVGGYDPEADGEIERLRVLQALEQTRWNRSAAARKLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=1103744 ACNQFN_RS18275 WP_418647200.1 3793595..3795001(-) (pilR) [Thauera butanivorans strain TB]
ATGAGCATCCACGAACGCCGCCACCGTCCTGCATCCGTCGACGTCCTCGTCGTCGATGACGAGGACGACATCCGCGAACT
GCTGGAGCTGTCGCTGCTGCGCATGGGGCTGGGCTGCGACACGGCCGGTTCGGTGGCCGAGGCGCGTGCCTGCCTGGAGC
AGCGGCGCTACCGCCTGTGCCTGACCGACATGCGCCTGCCCGATGGCGAAGGCTTCGAGCTGGTCGAGTACATCCAGCAG
CATCTGCCCGGCCTGCCGGTGGCGGTGATCACGGCCTTCGGCAGCATCGACACCGCGATCCGCGCGCTCAAGCTCGGCGC
CTTCGATTTCGTCACCAAGCCGATCGAGCTCAAGGTGCTGCGCGAACTCGTCAGCCATGCGCTCAAGCTCGAACCGGGCG
CCGGGGCGGATGCGCCGGATGGACGCAGGCTGATCGGCGCCTCGCCGGCTTTCCAGCAACTGCGCAGCCAGGCCGAGAAG
CTGGCGCGCAACCAGGCGCCGGTGTTCATCCACGGCGAGTCGGGTACCGGCAAGGAAGTCATCGCCCGCCTGATCCACGC
GCTCGGCGCGCGCGCCAACGGGCCGTTCGTGCCGGTCAATTGTGGTGCGATCTCGCCCGAGTTGATGGAAAGCGAGTTCT
TCGGCCATCGCAAGGGCAGCTTCACCGGCGCGGCCAGCGACAAGGAAGGCCTGTTCCAGGCCGCTCGCGGCGGCACCCTG
TTTCTCGACGAGATCGGCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGTTGCGCGCGCTGCAGGAGCGGGCCGTGCGCCC
GGTCGGTGCGCATGCCGAGGAGGCGGTGGATGTGCGCATCCTGTCTGCTTCCCACCAGGATCTGGCGCGGCTGGTGGCCG
AAGGCCGCTTTCGCCAGGATCTGTTCTTCCGCATCAACGTGATCACGCTGCGTGTTCCGCCGCTGCGCGAGCGCAGCGAG
GACATTCCCGCGCTGGCCGAACACATCCTCGCCCGCGTCGCCGAGCGCGAGGGTACGACACCGCGCCGCCTGTCGCCCGC
GGCGCAGGCGGCGCTGCAGCGCCATTCCTTCCCGGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGCGCCTGCGCCT
TGTGCGAAGGGGACGAGATCGGTGTCGAGGACATCGACCTGTTGCCGGTGGAGTTTGCGTCGCCGGTGGCGGCCGTACCT
GCAGCGATGTCCGGTCCCGGTGCAGCAGTGGAGCCGGGCATGGCTGACGTCGGTGGCTACGATCCCGAGGCTGATGGCGA
GATCGAGCGTCTGCGCGTGCTGCAGGCGCTGGAGCAGACACGCTGGAACCGCAGCGCGGCGGCGCGCAAGCTCGGCATGA
CGCTGCGCCAGTTGCGCTACCGGCTGCAGAAGTGGGGCATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-465)

Response regulator receiver domain (Response_reg)

(15-124)

Sigma-54 interaction domain (Sigma54_activat)

(144-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.56

97.222

0.579
  pilR Acinetobacter baumannii strain A118

49.46

98.932

0.489

Multiple sequence alignment