Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACNR0F_RS03945 Genome accession   NZ_CP183037
Coordinates   741304..742110 (-) Length   268 a.a.
NCBI ID   WP_003790494.1    Uniprot ID   -
Organism   Kingella kingae strain URMC_2412A945     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 736304..747110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR0F_RS03910 (ACNR0F_03910) - 736562..737101 (-) 540 WP_003786949.1 hypothetical protein -
  ACNR0F_RS03915 (ACNR0F_03915) - 737110..737361 (-) 252 WP_026036201.1 acyl carrier protein -
  ACNR0F_RS03920 (ACNR0F_03920) - 737368..737628 (-) 261 WP_003786945.1 phosphopantetheine-binding protein -
  ACNR0F_RS03925 (ACNR0F_03925) - 737794..738111 (-) 318 WP_230470785.1 hypothetical protein -
  ACNR0F_RS03930 (ACNR0F_03930) - 738115..738405 (-) 291 WP_230470783.1 hypothetical protein -
  ACNR0F_RS03935 (ACNR0F_03935) lpdA 738484..740278 (-) 1795 Protein_776 dihydrolipoyl dehydrogenase -
  ACNR0F_RS03940 (ACNR0F_03940) folP 740361..741200 (-) 840 WP_003790497.1 dihydropteroate synthase -
  ACNR0F_RS03945 (ACNR0F_03945) comL 741304..742110 (-) 807 WP_003790494.1 outer membrane protein assembly factor BamD Machinery gene
  ACNR0F_RS03950 (ACNR0F_03950) rluD 742111..743226 (+) 1116 WP_038310838.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACNR0F_RS03955 (ACNR0F_03955) rnc 743230..743955 (+) 726 WP_418605087.1 ribonuclease III -
  ACNR0F_RS03965 (ACNR0F_03965) - 744976..745935 (-) 960 WP_003790485.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31140.01 Da        Isoelectric Point: 7.9338

>NTDB_id=1103711 ACNR0F_RS03945 WP_003790494.1 741304..742110(-) (comL) [Kingella kingae strain URMC_2412A945]
MKKFLLVISVAAALSACASNTSTVSKDAQLTQNWSNDQLYSEARQELNDGNYTRATALYELLRARQADGRYTEQSLIESA
YAHFKNEEPAKALQNLARFEQNYPASVDMDYALYLKGLVLFAEDQSFLRRLASQDWSDRDPEANRRAFRVFEQLVNRYPN
SKYAEDARKRMAQLVDALGGHEIAIARYYAKRTAYLAANNRAQRILEQFQNTRYVEEALAIMIYTYEQMGNADMAEAIRR
VLAQNLPNSPYLQQAWKPDEMPWWRWWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1103711 ACNR0F_RS03945 WP_003790494.1 741304..742110(-) (comL) [Kingella kingae strain URMC_2412A945]
ATGAAAAAATTTCTTCTTGTTATTTCGGTTGCGGCGGCTCTTTCGGCTTGTGCCAGCAACACTTCTACGGTTAGTAAAGA
CGCGCAATTAACGCAAAATTGGTCAAACGACCAGCTATACAGCGAAGCGCGTCAGGAATTAAATGACGGCAATTATACAC
GCGCAACGGCGTTATATGAATTGCTACGCGCACGCCAAGCCGATGGTCGCTATACCGAGCAATCTTTGATTGAATCTGCC
TATGCCCATTTTAAAAACGAAGAACCTGCCAAAGCCTTGCAAAATTTAGCACGCTTTGAGCAAAACTACCCTGCCAGCGT
GGATATGGATTACGCGCTATATTTGAAAGGTTTGGTGTTGTTTGCCGAAGACCAATCGTTCCTACGCCGTTTGGCATCAC
AAGACTGGTCAGACCGCGACCCAGAAGCTAACCGCCGCGCATTCCGCGTATTTGAACAGCTGGTTAATCGCTATCCAAAC
AGCAAATATGCCGAAGATGCGCGTAAACGTATGGCGCAGTTGGTTGATGCTTTGGGTGGGCACGAAATCGCGATTGCGCG
TTACTATGCCAAACGCACGGCATATTTAGCCGCCAACAATCGCGCTCAACGCATTTTGGAGCAATTCCAAAACACGCGCT
ATGTGGAAGAAGCGTTGGCGATTATGATTTATACCTACGAGCAAATGGGCAATGCCGATATGGCAGAAGCCATACGCCGC
GTGTTGGCGCAAAACTTGCCCAACAGCCCATATTTGCAACAGGCGTGGAAACCCGATGAGATGCCTTGGTGGCGTTGGTG
GAAATGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.678

99.627

0.575
  comL Neisseria gonorrhoeae MS11

57.303

99.627

0.571

Multiple sequence alignment