Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC/pilC2   Type   Machinery gene
Locus tag   ACNR0F_RS00420 Genome accession   NZ_CP183037
Coordinates   72962..77473 (+) Length   1503 a.a.
NCBI ID   WP_285065181.1    Uniprot ID   -
Organism   Kingella kingae strain URMC_2412A945     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67962..82473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR0F_RS00400 (ACNR0F_00400) - 68513..69100 (-) 588 WP_003789148.1 FixH family protein -
  ACNR0F_RS00405 (ACNR0F_00405) ccoG 69104..70532 (-) 1429 Protein_75 cytochrome c oxidase accessory protein CcoG -
  ACNR0F_RS00410 (ACNR0F_00410) - 70629..71909 (-) 1281 WP_038310528.1 valine--pyruvate transaminase -
  ACNR0F_RS00415 (ACNR0F_00415) - 72040..72747 (+) 708 WP_019389760.1 SAM-dependent methyltransferase -
  ACNR0F_RS00420 (ACNR0F_00420) pilC/pilC2 72962..77473 (+) 4512 WP_285065181.1 pilus assembly protein Machinery gene
  ACNR0F_RS00425 (ACNR0F_00425) mnmG 77778..79664 (+) 1887 WP_019389758.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  ACNR0F_RS00430 (ACNR0F_00430) - 79707..81791 (-) 2085 WP_418604945.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 1503 a.a.        Molecular weight: 163941.77 Da        Isoelectric Point: 8.3007

>NTDB_id=1103701 ACNR0F_RS00420 WP_285065181.1 72962..77473(+) (pilC/pilC2) [Kingella kingae strain URMC_2412A945]
MKPASKKRISTQLRQLNKMLWVAFPLLSLPFYAQAENNTPFSDSSLTGIQKTYGPNVTLALSVEFPTAGAAYSTATEFTD
AMMSQTFLGYFDNTKCYEYVAPNDRDGMKAFADNGYKQNSGSDNVSKDKYGTPLLAPDGTQALAGKQRSWIFDYDGRRFD
IPDTARRNNMLYESIRQKEFFLYDSHDSIATSGAVNHKYETKEQEYFHPTRTASTSNGMVGVCDGPNEFSGNFMNWATMS
AIDIFRQAMTGGNRALGVAKDTTAYQLGDTPEQTFLRRANVVRAQNANYMQRTVRLSEANIKKVLPHDYAVDKLNPILAD
YGQELSSNKFFLYKGYVPHPYAYRMRLDSREWEDETKKTNIKAMTGKVTLATDRPLLVRNSGFGVDFRRSIRDVSGDGWY
HKAFRRDYWSSGRGWWGATWLGDINDGGNGRYWAPVKSRVMPYQVTVEACVPGKLEANCVLQPSGSYKPEGLMQQNASTM
RFAAFGYANIAGNTVSGGVLRSRMRYIANPNKDGATATGPAVKYQEEIDPKTGQFYVNPDRNAEETAAQAFVVNTGDKNL
PSSNFDNSGTINYLNKFGDYNNYKTNDPGAELYYTALRYLRNKGFPALYKTKLAEVAGNRITKEVRDNFPLITDNWDNPL
NVFSDNTTLNVADNVCRPNYIIYIGDTNTHADASLPGGWNTQYDFNVNDDPDIHVRNLIDGKIKPNEPWLNWFNGNWGAD
ASPGGAMAALALWGRTHDLQPDFGKRLSSFMIDTVEDGDFKASAGGKNNNYWLAAKYGGFNDLNKNGLPDVGEWETTVNS
NKVGAFESASIYKGTPSNYAAANNPASMVAALNRAFEATAIAEAPSATSLGTTSTKPLSEGGKTILLQSVFRDATTVVNG
ARVKVASGDVLGLEATLKGHKLEYEKKWSAGEKLQAAYHNANGWTNRKVFTRANANSGAVRLQGSNNAVTSVVGGSDAAD
LVNYALGAPTYEDGRKFRIRPNHLMGTVINSPVVTIPSRTGSVSTVAGSCTYPASANISSRANRHVVAANDGMFYVLNSS
GQEIASYMPSTALSQLARYASPNYSHFFMNDGIAATSEVCFDTGNDKGNGKAHTVVVGTAGRGGNSVYALDLTKPTDLTE
SDMLWEFTHSGLGKSLFAPIITHDSTGTPVAIVSGGYNASEDTGYIYVLKLNKGANEPWSEDTNNTADAAPWQNGGNWYR
IKLGKGGVGELFAYQNEARTVAAVYGGDLAGNLWKVSQNAKGRFVAGYADKSTGENLPIFKTAGGTSIVGAPFAQIVGGK
TYVVFITGRYFNKSDLPSTTKPVQNYAYGIIESKIGDNRTPTGSGALIADGDNLLQQSVNEQIVPDSVPQTVFYKVTNHQ
ITNQHQGWKLKLQQNWLSIDKSAIRGKRVAEFSAVNPLATDVASAGNMCTENGSTYSLSVNVFNGGVYNKPIYDTNGDGK
FTEADTLVSVAGQAGILTRLTEVSTEFGRIVGGINSMGNMIQMPKDNITSDPVVKRVSWREIF

Nucleotide


Download         Length: 4512 bp        

>NTDB_id=1103701 ACNR0F_RS00420 WP_285065181.1 72962..77473(+) (pilC/pilC2) [Kingella kingae strain URMC_2412A945]
ATGAAGCCAGCAAGCAAAAAGCGCATTTCAACGCAACTGCGCCAGCTCAATAAAATGCTGTGGGTAGCCTTTCCTTTGCT
ATCCTTGCCTTTTTATGCACAAGCAGAAAACAATACCCCTTTTTCTGATTCATCATTAACAGGTATTCAAAAAACCTACG
GACCAAACGTAACATTGGCTTTGTCGGTGGAGTTCCCGACTGCGGGTGCAGCTTATTCAACTGCGACTGAATTTACCGAT
GCCATGATGAGCCAAACTTTTTTGGGCTATTTCGACAACACTAAATGCTATGAATACGTTGCGCCAAATGACCGAGACGG
TATGAAGGCGTTTGCTGATAATGGCTATAAGCAAAATAGTGGCTCAGATAATGTATCCAAGGATAAGTATGGTACACCAT
TGCTTGCGCCCGATGGTACGCAAGCGTTGGCGGGTAAACAGCGCTCATGGATATTCGATTATGATGGACGCAGGTTCGAT
ATTCCGGACACAGCACGCAGAAACAATATGCTTTATGAATCAATACGACAGAAAGAATTCTTCTTGTATGATAGTCATGA
TAGTATAGCTACCAGCGGTGCAGTTAATCATAAATATGAAACGAAAGAGCAAGAATATTTCCATCCAACACGAACCGCCA
GTACAAGCAATGGCATGGTGGGTGTTTGTGATGGTCCAAATGAATTTAGTGGTAACTTCATGAACTGGGCAACCATGTCG
GCGATTGATATTTTCCGTCAAGCGATGACAGGTGGTAACCGTGCGCTGGGTGTTGCAAAAGACACAACGGCTTATCAATT
AGGTGATACGCCCGAGCAAACGTTCTTGCGCCGTGCTAATGTGGTGCGCGCACAAAATGCGAACTATATGCAGCGCACAG
TTCGATTAAGTGAAGCCAATATCAAAAAAGTCTTGCCACACGATTATGCAGTAGATAAACTCAATCCTATTTTGGCAGAC
TATGGTCAAGAATTGTCAAGTAATAAGTTTTTCTTATACAAGGGTTATGTTCCACACCCATACGCATATCGTATGCGGTT
GGATTCAAGAGAGTGGGAAGATGAAACTAAAAAAACCAACATTAAGGCGATGACAGGTAAAGTTACATTGGCGACTGATC
GCCCATTGCTTGTACGCAACTCTGGTTTTGGCGTGGATTTCCGCCGTAGTATTCGCGACGTATCAGGTGATGGTTGGTAT
CACAAAGCGTTTCGTCGGGATTATTGGAGTTCAGGCAGAGGTTGGTGGGGGGCGACTTGGCTTGGTGACATCAACGATGG
TGGAAATGGTCGCTATTGGGCGCCTGTTAAATCGCGTGTAATGCCTTATCAAGTAACCGTAGAAGCGTGTGTGCCAGGCA
AATTGGAAGCCAACTGCGTGCTTCAGCCATCTGGTTCGTATAAGCCAGAGGGTTTAATGCAACAAAACGCGTCAACCATG
CGTTTTGCAGCATTTGGTTACGCCAATATTGCAGGTAATACCGTGAGTGGTGGTGTGTTACGTAGCCGTATGCGTTATAT
CGCCAATCCAAATAAAGATGGAGCAACGGCAACAGGACCAGCTGTAAAATACCAAGAAGAGATTGACCCAAAAACAGGTC
AGTTCTATGTGAACCCAGACCGCAATGCAGAAGAAACAGCAGCGCAGGCATTTGTGGTTAATACAGGCGATAAAAACTTG
CCATCTTCTAATTTTGACAATTCGGGCACGATTAATTATCTGAACAAGTTTGGTGATTATAACAACTATAAAACCAATGA
CCCTGGCGCAGAGTTGTATTACACCGCATTGCGCTATTTGCGTAATAAAGGTTTCCCAGCGTTGTACAAAACCAAGTTAG
CAGAAGTGGCTGGTAATCGGATTACAAAAGAGGTTCGCGATAACTTCCCATTGATTACCGACAATTGGGATAACCCATTA
AACGTGTTCAGCGACAACACTACTTTGAATGTAGCAGATAACGTGTGTCGTCCAAACTATATTATCTATATTGGCGATAC
CAATACTCACGCTGATGCTTCATTGCCTGGCGGCTGGAATACGCAATACGATTTCAATGTGAATGACGACCCAGACATTC
ATGTGCGTAACTTGATTGACGGGAAAATCAAACCAAACGAACCTTGGTTGAATTGGTTTAATGGCAACTGGGGTGCAGAT
GCATCACCAGGTGGCGCAATGGCGGCGTTGGCGTTGTGGGGTCGAACCCACGATTTGCAGCCGGATTTTGGTAAGCGTTT
AAGTAGCTTTATGATTGATACGGTTGAGGATGGTGACTTTAAAGCATCGGCAGGAGGTAAGAATAATAACTACTGGTTAG
CAGCCAAATACGGTGGTTTCAATGATTTGAATAAAAATGGTCTTCCAGACGTAGGCGAATGGGAAACGACGGTTAATTCA
AATAAAGTTGGCGCATTTGAGAGCGCTAGCATTTATAAAGGTACGCCATCAAACTACGCAGCCGCTAACAACCCAGCTTC
AATGGTGGCAGCTTTGAACCGTGCGTTTGAAGCCACAGCCATAGCCGAAGCACCTTCTGCAACCAGCTTGGGCACAACTA
GCACCAAACCTTTGTCAGAAGGCGGTAAAACTATATTGTTGCAATCGGTGTTCCGCGATGCAACCACTGTGGTAAATGGT
GCGCGTGTTAAAGTGGCATCGGGCGATGTGTTGGGATTGGAAGCAACCTTAAAAGGTCATAAGTTGGAGTACGAGAAAAA
ATGGTCGGCTGGCGAAAAATTGCAGGCTGCTTATCACAATGCAAATGGTTGGACAAATCGTAAGGTGTTTACTCGTGCTA
ACGCCAATAGCGGTGCAGTTCGTTTGCAAGGTAGCAATAATGCAGTTACGAGCGTTGTAGGTGGCTCAGATGCAGCAGAT
TTGGTTAATTACGCTTTGGGTGCACCAACGTATGAAGATGGCAGAAAATTCCGTATTCGTCCAAACCATTTGATGGGTAC
AGTGATTAACTCGCCAGTAGTAACCATTCCATCACGCACAGGCAGCGTTAGCACCGTGGCAGGTAGCTGTACTTATCCTG
CATCTGCCAATATTAGCTCGCGTGCAAATCGCCATGTGGTAGCAGCCAATGATGGTATGTTCTATGTGTTGAACTCGTCA
GGTCAGGAAATTGCATCGTATATGCCATCAACTGCGTTGAGTCAGTTGGCACGTTATGCGTCGCCAAATTACAGCCATTT
CTTTATGAATGACGGTATTGCCGCTACTTCTGAAGTATGTTTTGACACGGGTAATGACAAGGGTAATGGCAAGGCGCATA
CGGTAGTAGTTGGCACAGCAGGTCGTGGTGGTAACAGCGTGTATGCGTTGGATTTGACTAAACCAACAGACTTGACTGAA
AGTGATATGCTGTGGGAGTTCACGCACTCTGGTTTGGGTAAGAGCTTGTTTGCGCCAATCATCACGCACGATAGCACTGG
TACACCTGTGGCGATTGTGAGCGGTGGTTATAACGCAAGCGAAGACACTGGTTACATCTATGTTCTGAAATTGAACAAGG
GTGCAAATGAACCATGGAGTGAAGATACCAACAATACTGCCGATGCTGCTCCATGGCAAAATGGTGGTAACTGGTATCGC
ATCAAGTTGGGTAAAGGTGGCGTAGGTGAATTGTTTGCTTACCAAAATGAAGCACGCACCGTTGCAGCTGTGTATGGTGG
CGATTTGGCAGGTAATTTGTGGAAGGTATCGCAAAATGCTAAAGGTCGCTTTGTAGCGGGTTATGCAGATAAATCGACAG
GCGAAAACTTGCCTATCTTCAAAACTGCAGGTGGTACATCTATTGTAGGTGCGCCTTTTGCACAAATCGTAGGTGGTAAA
ACGTATGTTGTGTTTATTACTGGTCGCTACTTCAACAAGAGCGATTTGCCTAGCACAACCAAACCAGTACAAAACTACGC
ATACGGTATCATCGAGAGCAAAATCGGCGATAACCGCACGCCAACTGGTAGCGGTGCATTGATTGCAGACGGTGATAATT
TGTTGCAACAAAGCGTGAATGAGCAAATTGTTCCAGATAGCGTGCCACAAACTGTGTTCTATAAGGTTACGAATCACCAA
ATTACCAACCAGCATCAAGGTTGGAAGTTGAAATTGCAACAAAATTGGTTGAGTATCGATAAGAGTGCGATTCGCGGCAA
ACGTGTTGCAGAATTTAGCGCAGTGAATCCGTTGGCGACCGATGTGGCTAGTGCTGGTAATATGTGTACTGAAAACGGTT
CGACTTATTCGTTGTCAGTTAATGTGTTCAATGGTGGTGTGTACAACAAACCTATCTATGACACAAACGGTGATGGTAAG
TTTACCGAAGCGGATACTTTGGTATCTGTGGCTGGTCAGGCTGGTATTTTGACTCGCTTAACCGAAGTTTCTACCGAGTT
CGGTCGTATTGTTGGCGGTATCAACAGTATGGGTAACATGATTCAAATGCCAAAAGACAATATCACCAGCGACCCTGTGG
TGAAACGTGTATCTTGGCGCGAGATTTTCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(985-1342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC/pilC2 Kingella kingae strain KK03

89.338

100

0.898

Multiple sequence alignment