Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACAK31_RS16935 | Genome accession | NZ_AP031581 |
| Coordinates | 3515663..3516523 (+) | Length | 286 a.a. |
| NCBI ID | WP_001152273.1 | Uniprot ID | A0A836M4G0 |
| Organism | Acinetobacter baumannii strain JUNP496 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3510663..3521523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK31_RS16915 (JUNP496_3394) | secG | 3511268..3511597 (-) | 330 | WP_096877299.1 | preprotein translocase subunit SecG | - |
| ACAK31_RS16920 (JUNP496_3395) | tpiA | 3511610..3512404 (-) | 795 | WP_000016522.1 | triose-phosphate isomerase | - |
| ACAK31_RS16925 (JUNP496_3396) | pilB | 3512695..3514407 (+) | 1713 | WP_001274987.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACAK31_RS16930 (JUNP496_3397) | pilC | 3514437..3515663 (+) | 1227 | WP_000279218.1 | type II secretion system F family protein | Machinery gene |
| ACAK31_RS16935 (JUNP496_3398) | pilD | 3515663..3516523 (+) | 861 | WP_001152273.1 | A24 family peptidase | Machinery gene |
| ACAK31_RS16940 (JUNP496_3399) | coaE | 3516525..3517121 (+) | 597 | WP_000874125.1 | dephospho-CoA kinase | - |
| ACAK31_RS16945 (JUNP496_3400) | - | 3517118..3518032 (-) | 915 | WP_000075015.1 | DMT family transporter | - |
| ACAK31_RS16950 (JUNP496_3401) | rlmB | 3518068..3518817 (-) | 750 | WP_001118149.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| ACAK31_RS16955 (JUNP496_3402) | - | 3518919..3519245 (-) | 327 | WP_000099685.1 | pyrimidine/purine nucleoside phosphorylase | - |
| ACAK31_RS16960 (JUNP496_3403) | - | 3519322..3520632 (-) | 1311 | WP_029574813.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 32088.53 Da Isoelectric Point: 7.1041
>NTDB_id=110334 ACAK31_RS16935 WP_001152273.1 3515663..3516523(+) (pilD) [Acinetobacter baumannii strain JUNP496]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Nucleotide
Download Length: 861 bp
>NTDB_id=110334 ACAK31_RS16935 WP_001152273.1 3515663..3516523(+) (pilD) [Acinetobacter baumannii strain JUNP496]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
98.951 |
100 |
0.99 |
| pilD | Acinetobacter nosocomialis M2 |
98.601 |
100 |
0.986 |
| pilD | Vibrio cholerae strain A1552 |
54.044 |
95.105 |
0.514 |
| pilD | Vibrio campbellii strain DS40M4 |
52.92 |
95.804 |
0.507 |
| pilD | Neisseria gonorrhoeae MS11 |
47.727 |
92.308 |
0.441 |