Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACLM40_RS07890 Genome accession   NZ_CP182859
Coordinates   1710385..1710729 (-) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain APPFJLYC01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705385..1715729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLM40_RS07880 (ACLM40_07880) hsdR 1706864..1709227 (-) 2364 WP_039709276.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  ACLM40_RS07885 (ACLM40_07885) asd 1709344..1710234 (-) 891 WP_005602033.1 archaetidylserine decarboxylase -
  ACLM40_RS07890 (ACLM40_07890) comEA/comE1 1710385..1710729 (-) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  ACLM40_RS07895 (ACLM40_07895) - 1711030..1712421 (+) 1392 WP_005605242.1 LysM-like peptidoglycan-binding domain-containing protein -
  ACLM40_RS07900 (ACLM40_07900) - 1712543..1712947 (+) 405 WP_005599908.1 MliC family protein -
  ACLM40_RS07905 (ACLM40_07905) waaF 1713029..1714066 (+) 1038 WP_418146029.1 lipopolysaccharide heptosyltransferase II -
  ACLM40_RS07910 (ACLM40_07910) rfaC 1714141..1715100 (+) 960 WP_005602025.1 lipopolysaccharide heptosyltransferase RfaC -
  ACLM40_RS07915 (ACLM40_07915) rpsL 1715222..1715596 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=1102766 ACLM40_RS07890 WP_005599904.1 1710385..1710729(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=1102766 ACLM40_RS07890 WP_005599904.1 1710385..1710729(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTAGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43

Multiple sequence alignment