Detailed information NTG1102761

Bioinformatically predicted

Overview

• Name: pilF
• Type: Machinery gene
• Locus tag: ACLM40_RS06710
• Genome accession: NZ_CP182859
• Coordinates: 1471044..1471592 (-)
• Length: 182 a.a.
• NCBI ID: WP_418145960.1
• Uniprot ID: -
• Organism: Actinobacillus pleuropneumoniae strain APPFJLYC01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1466044..1476592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLM40_RS06690 (ACLM40_06690)	-	1466096..1467376 (+)	1281	WP_418146781.1	NAD(P)/FAD-dependent oxidoreductase	-
ACLM40_RS06695 (ACLM40_06695)	-	1467484..1467906 (-)	423	WP_418145957.1	type II toxin-antitoxin system VapC family toxin	-
ACLM40_RS06700 (ACLM40_06700)	-	1467906..1468193 (-)	288	WP_418145958.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
ACLM40_RS06705 (ACLM40_06705)	-	1468629..1470968 (-)	2340	WP_418145959.1	Tex family protein	-
ACLM40_RS06710 (ACLM40_06710)	pilF	1471044..1471592 (-)	549	WP_418145960.1	type IV pilus biogenesis/stability protein PilW	Machinery gene
ACLM40_RS06715 (ACLM40_06715)	-	1471647..1472828 (-)	1182	WP_005608495.1	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	-
ACLM40_RS06740 (ACLM40_06740)	gltX	1473737..1475176 (+)	1440	WP_418145961.1	glutamate--tRNA ligase	-
ACLM40_RS06750 (ACLM40_06750)	yefM	1475514..1475765 (+)	252	WP_418145962.1	YoeB-YefM toxin-antitoxin system antitoxin YefM	-
ACLM40_RS06755 (ACLM40_06755)	-	1475762..1476022 (+)	261	WP_418145963.1	Txe/YoeB family addiction module toxin	-
ACLM40_RS06760 (ACLM40_06760)	-	1476181..1476348 (-)	168	WP_279468242.1	Trm112 family protein	-

Sequence

Protein

• Length: 182 a.a.
• Molecular weight: 20696.36 Da
• Isoelectric Point: 7.2604

>NTDB_id=1102761 ACLM40_RS06710 WP_418145960.1 1471044..1471592(-) (pilF) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSYDQNDYLPHSVLA
YYYQQIGDQAHAERAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAAQR

Nucleotide

• Length: 549 bp

>NTDB_id=1102761 ACLM40_RS06710 WP_418145960.1 1471044..1471592(-) (pilF) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTATTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACTTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCTACGATCAAAACGATTACTTACCTCATTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGCTCACGCCGAGCGAGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAGTTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAGCAGCCTTACTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACAGCGTTAG

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (40-72)

• Tetratricopeptide repeat (TPR_8) (79-104)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilF	Glaesserella parasuis strain SC1401	66.486	100	0.676
pilF/pilF2	Haemophilus influenzae Rd KW20	46.784	93.956	0.44