Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACAK32_RS09320 | Genome accession | NZ_AP031580 |
| Coordinates | 1912684..1913064 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain JUNP419 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1907684..1918064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK32_RS09290 (JUNP419_1868) | kdsB | 1908587..1909348 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACAK32_RS09295 (JUNP419_1869) | - | 1909360..1910340 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ACAK32_RS09300 (JUNP419_1870) | - | 1910352..1910693 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACAK32_RS09305 (JUNP419_1871) | - | 1910711..1911484 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ACAK32_RS09310 (JUNP419_1872) | - | 1911522..1912130 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACAK32_RS09315 (JUNP419_1873) | - | 1912140..1912694 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ACAK32_RS09320 (JUNP419_1874) | xcpV | 1912684..1913064 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACAK32_RS09325 (JUNP419_1875) | xcpW | 1913064..1913765 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACAK32_RS09330 (JUNP419_1876) | gspK | 1913765..1914724 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ACAK32_RS09335 (JUNP419_1877) | - | 1914955..1915551 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ACAK32_RS09340 (JUNP419_1878) | ung | 1915602..1916315 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ACAK32_RS09345 (JUNP419_1879) | - | 1916312..1917436 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACAK32_RS09350 (JUNP419_1880) | tadA | 1917443..1917946 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=110273 ACAK32_RS09320 WP_000836911.1 1912684..1913064(+) (xcpV) [Acinetobacter baumannii strain JUNP419]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=110273 ACAK32_RS09320 WP_000836911.1 1912684..1913064(+) (xcpV) [Acinetobacter baumannii strain JUNP419]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |