Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACM641_RS08780 Genome accession   NZ_CP182815
Coordinates   1712194..1712526 (+) Length   110 a.a.
NCBI ID   WP_025116050.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain A15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707194..1717526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM641_RS08750 - 1707679..1707858 (-) 180 WP_008181026.1 DUF2759 domain-containing protein -
  ACM641_RS08755 - 1708028..1708672 (+) 645 WP_418302522.1 MBL fold metallo-hydrolase -
  ACM641_RS08760 - 1708720..1708962 (-) 243 WP_004231035.1 DUF2626 family protein -
  ACM641_RS08765 - 1709080..1709790 (-) 711 WP_418302523.1 helix-turn-helix transcriptional regulator -
  ACM641_RS08770 comGA 1710116..1711135 (+) 1020 WP_025116048.1 competence type IV pilus ATPase ComGA -
  ACM641_RS08775 comGB 1711110..1712183 (+) 1074 WP_418302524.1 competence type IV pilus assembly protein ComGB -
  ACM641_RS08780 comGC 1712194..1712526 (+) 333 WP_025116050.1 competence type IV pilus major pilin ComGC Machinery gene
  ACM641_RS08785 comGD 1712526..1712966 (+) 441 WP_025116051.1 competence type IV pilus minor pilin ComGD -
  ACM641_RS08790 - 1712959..1713276 (+) 318 WP_418302525.1 hypothetical protein -
  ACM641_RS08795 comGF 1713305..1713697 (+) 393 WP_418302526.1 competence type IV pilus minor pilin ComGF -
  ACM641_RS08800 - 1713896..1714411 (+) 516 WP_025116055.1 shikimate kinase -
  ACM641_RS08805 gcvT 1714913..1716016 (+) 1104 WP_025116056.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM641_RS08810 gcvPA 1716042..1717388 (+) 1347 WP_025116057.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12246.34 Da        Isoelectric Point: 5.1145

>NTDB_id=1102541 ACM641_RS08780 WP_025116050.1 1712194..1712526(+) (comGC) [Lysinibacillus fusiformis strain A15]
MKHIKYQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMAYPTLEDLVKEGYLKE
NETTCPNKEEIVITTKGEVRLANVGAGANG

Nucleotide


Download         Length: 333 bp        

>NTDB_id=1102541 ACM641_RS08780 WP_025116050.1 1712194..1712526(+) (comGC) [Lysinibacillus fusiformis strain A15]
ATGAAACATATTAAATATCAAAATGGTTTTACTTTGATTGAAATGCTTATTGTTTTGTTAATTATTTCTATATTAATTTT
AATTACAATTCCAAATGTTACGAAGCACTTTGCTACGATTGATGAGAAGGGCTGTGCTGCCTATATCAATATGGTACAGG
GGCAAGTAGAAGCCTATAGAGTGGATTTTATGGCATATCCAACTCTAGAGGATTTAGTGAAAGAAGGCTATTTGAAAGAA
AATGAAACAACTTGCCCTAATAAAGAAGAAATAGTCATTACGACTAAGGGAGAGGTACGCTTAGCAAATGTAGGTGCAGG
TGCTAATGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

55.208

87.273

0.482
  comGC Staphylococcus aureus MW2

45.263

86.364

0.391
  comGC Staphylococcus aureus N315

45.263

86.364

0.391

Multiple sequence alignment