Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACM641_RS00100 Genome accession   NZ_CP182815
Coordinates   16560..17129 (+) Length   189 a.a.
NCBI ID   WP_008177953.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain A15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 11560..22129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM641_RS00070 - 12027..12899 (+) 873 WP_025115711.1 mechanosensitive ion channel family protein -
  ACM641_RS00075 - 12901..13101 (+) 201 WP_008177961.1 DUF951 domain-containing protein -
  ACM641_RS00080 ychF 13199..14299 (+) 1101 WP_025115712.1 redox-regulated ATPase YchF -
  ACM641_RS00085 - 14382..15422 (+) 1041 WP_025115713.1 acyl-CoA dehydrogenase -
  ACM641_RS00090 - 15464..16048 (-) 585 WP_025115714.1 DUF3267 domain-containing protein -
  ACM641_RS00095 rpsF 16226..16513 (+) 288 WP_008177955.1 30S ribosomal protein S6 -
  ACM641_RS00100 ssbA 16560..17129 (+) 570 WP_008177953.1 single-stranded DNA-binding protein Machinery gene
  ACM641_RS00105 rpsR 17168..17404 (+) 237 WP_004233359.1 30S ribosomal protein S18 -
  ACM641_RS00110 - 17629..18570 (+) 942 WP_025115715.1 YybS family protein -
  ACM641_RS00115 - 18584..20554 (+) 1971 WP_025115716.1 DHH family phosphoesterase -
  ACM641_RS00120 rplI 20554..21000 (+) 447 WP_418301814.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20589.58 Da        Isoelectric Point: 4.7719

>NTDB_id=1102527 ACM641_RS00100 WP_008177953.1 16560..17129(+) (ssbA) [Lysinibacillus fusiformis strain A15]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1102527 ACM641_RS00100 WP_008177953.1 16560..17129(+) (ssbA) [Lysinibacillus fusiformis strain A15]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTACACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCAAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.497

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487

Multiple sequence alignment