Detailed information NTG1102015

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: Q9272_RS03185
• Genome accession: NZ_CP182528
• Coordinates: 713706..715097 (+)
• Length: 463 a.a.
• NCBI ID: WP_033013168.1
• Uniprot ID: A0A854DU87
• Organism: Xanthomonas oryzae pv. oryzae strain A145
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	708795..719879	713706..715097	within	0

Gene organization within MGE regions

Location: 708795..719879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9272_RS03165 (Q9272_03165)	-	708795..709286 (-)	492	WP_075239558.1	hypothetical protein	-
Q9272_RS03170 (Q9272_03170)	sucD	709459..710334 (-)	876	WP_011258368.1	succinate--CoA ligase subunit alpha	-
Q9272_RS03175 (Q9272_03175)	sucC	710359..711528 (-)	1170	WP_011258367.1	ADP-forming succinate--CoA ligase subunit beta	-
Q9272_RS03180 (Q9272_03180)	-	711762..713375 (+)	1614	WP_011258366.1	sensor histidine kinase	-
Q9272_RS03185 (Q9272_03185)	pilR	713706..715097 (+)	1392	WP_033013168.1	sigma-54-dependent transcriptional regulator	Regulator
Q9272_RS03190 (Q9272_03190)	-	715170..715376 (+)	207	WP_027703281.1	YhfG family protein	-
Q9272_RS03195 (Q9272_03195)	-	715438..715599 (+)	162	WP_153296778.1	hypothetical protein	-
Q9272_RS03200 (Q9272_03200)	-	715687..715947 (+)	261	WP_011408073.1	Fic family protein	-
Q9272_RS03205 (Q9272_03205)	pilB	715956..717689 (-)	1734	WP_011408072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q9272_RS03210 (Q9272_03210)	-	717724..719250 (-)	1527	WP_075241021.1	hypothetical protein	-
Q9272_RS03215 (Q9272_03215)	-	719220..719849 (-)	630	WP_011408070.1	hypothetical protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 50092.42 Da
• Isoelectric Point: 6.3268

>NTDB_id=1102015 Q9272_RS03185 WP_033013168.1 713706..715097(+) (pilR) [Xanthomonas oryzae pv. oryzae strain A145]
MSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRLLGDSSAMESLRATIGKVARS
QAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAV
EPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1392 bp

>NTDB_id=1102015 Q9272_RS03185 WP_033013168.1 713706..715097(+) (pilR) [Xanthomonas oryzae pv. oryzae strain A145]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCAC
CTGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGT
CAGGCGCCGATCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACG
CGCCGCCGGCCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTC
CGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTC
GACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAG
CTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGC
ACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACG
ACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTG
GAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGC
GATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGC
GTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (420-460)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-114)

3D structure

• AlphaFold DB: A0A854DU87

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	99.784	0.629
pilR	Acinetobacter baumannii strain A118	48.268	99.784	0.482