Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q9276_RS15320 Genome accession   NZ_CP182518
Coordinates   3307607..3308998 (+) Length   463 a.a.
NCBI ID   WP_033013168.1    Uniprot ID   A0A854DU87
Organism   Xanthomonas oryzae pv. oryzae strain SK2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3302607..3313998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9276_RS15300 (Q9276_15295) - 3302696..3303187 (-) 492 WP_075239558.1 hypothetical protein -
  Q9276_RS15305 (Q9276_15300) sucD 3303360..3304235 (-) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  Q9276_RS15310 (Q9276_15305) sucC 3304260..3305429 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  Q9276_RS15315 (Q9276_15310) - 3305663..3307276 (+) 1614 WP_011258366.1 sensor histidine kinase -
  Q9276_RS15320 (Q9276_15315) pilR 3307607..3308998 (+) 1392 WP_033013168.1 sigma-54-dependent transcriptional regulator Regulator
  Q9276_RS15325 (Q9276_15320) - 3309071..3309277 (+) 207 WP_027703281.1 YhfG family protein -
  Q9276_RS15330 (Q9276_15325) - 3309339..3309500 (+) 162 WP_153296778.1 hypothetical protein -
  Q9276_RS15335 (Q9276_15330) - 3309588..3309848 (+) 261 WP_011408073.1 Fic family protein -
  Q9276_RS15340 (Q9276_15335) pilB 3309857..3311590 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9276_RS15345 (Q9276_15340) - 3311625..3313151 (-) 1527 WP_075241021.1 hypothetical protein -
  Q9276_RS15350 (Q9276_15345) - 3313121..3313690 (-) 570 WP_229001934.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50092.42 Da        Isoelectric Point: 6.3268

>NTDB_id=1101868 Q9276_RS15320 WP_033013168.1 3307607..3308998(+) (pilR) [Xanthomonas oryzae pv. oryzae strain SK2]
MSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRLLGDSSAMESLRATIGKVARS
QAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAV
EPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1101868 Q9276_RS15320 WP_033013168.1 3307607..3308998(+) (pilR) [Xanthomonas oryzae pv. oryzae strain SK2]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCAC
CTGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGT
CAGGCGCCGATCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACG
CGCCGCCGGCCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTC
CGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTC
GACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAG
CTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGC
ACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACG
ACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTG
GAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGC
GATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGC
GTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DU87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.268

99.784

0.482

Multiple sequence alignment