Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNFKJ_RS09885 Genome accession   NZ_CP182514
Coordinates   1971462..1972031 (+) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain subspecie aureus F-182     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966462..1977031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKJ_RS09860 cysE 1967675..1968322 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNFKJ_RS09865 cysS 1968306..1969706 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  ACNFKJ_RS09870 - 1969699..1970103 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNFKJ_RS09875 rlmB 1970111..1970857 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNFKJ_RS09880 - 1970857..1971381 (+) 525 WP_000664740.1 NYN domain-containing protein -
  ACNFKJ_RS09885 sigH 1971462..1972031 (+) 570 WP_000872867.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNFKJ_RS09890 rpmG 1972146..1972289 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  ACNFKJ_RS09895 secE 1972345..1972527 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNFKJ_RS09900 nusG 1972540..1973088 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNFKJ_RS09905 rplK 1973269..1973691 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNFKJ_RS09910 rplA 1973899..1974591 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNFKJ_RS09915 rplJ 1974863..1975363 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNFKJ_RS09920 rplL 1975406..1975774 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  ACNFKJ_RS09925 - 1975949..1976557 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=1101811 ACNFKJ_RS09885 WP_000872867.1 1971462..1972031(+) (sigH) [Staphylococcus aureus strain subspecie aureus F-182]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1101811 ACNFKJ_RS09885 WP_000872867.1 1971462..1972031(+) (sigH) [Staphylococcus aureus strain subspecie aureus F-182]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment