Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNFKJ_RS03850 Genome accession   NZ_CP182514
Coordinates   716850..717245 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain subspecie aureus F-182     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 711850..722245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKJ_RS03825 thiE 712311..712952 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  ACNFKJ_RS03830 thiM 712954..713745 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  ACNFKJ_RS03835 thiD 713729..714559 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNFKJ_RS03840 tenA 714552..715241 (-) 690 WP_000396068.1 thiaminase II -
  ACNFKJ_RS03845 sceD 715766..716461 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  ACNFKJ_RS03850 ssb 716850..717245 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  ACNFKJ_RS03855 - 717439..717879 (+) 441 WP_064289586.1 YwpF-like family protein -
  ACNFKJ_RS03860 fabZ 717936..718376 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNFKJ_RS03865 murA 718410..719675 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNFKJ_RS03870 - 719786..720019 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNFKJ_RS03875 - 720898..721302 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=1101799 ACNFKJ_RS03850 WP_000932696.1 716850..717245(-) (ssb) [Staphylococcus aureus strain subspecie aureus F-182]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1101799 ACNFKJ_RS03850 WP_000932696.1 716850..717245(-) (ssb) [Staphylococcus aureus strain subspecie aureus F-182]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment