Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNFKJ_RS00805 Genome accession   NZ_CP182514
Coordinates   168103..168789 (-) Length   228 a.a.
NCBI ID   WP_078059847.1    Uniprot ID   -
Organism   Staphylococcus aureus strain subspecie aureus F-182     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163103..173789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKJ_RS00785 rpsT 164017..164268 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACNFKJ_RS00790 holA 164313..165287 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNFKJ_RS00795 comEC 165344..167545 (-) 2202 WP_000967506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNFKJ_RS00800 - 167550..168011 (-) 462 WP_000439692.1 ComE operon protein 2 -
  ACNFKJ_RS00805 comEA 168103..168789 (-) 687 WP_078059847.1 ComEA family DNA-binding protein Machinery gene
  ACNFKJ_RS00810 - 168829..169545 (-) 717 WP_000084835.1 class I SAM-dependent DNA methyltransferase -
  ACNFKJ_RS00815 rsfS 169548..169901 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNFKJ_RS00820 yqeK 169902..170486 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNFKJ_RS00825 nadD 170476..171045 (-) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNFKJ_RS00830 yhbY 171048..171338 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  ACNFKJ_RS00835 aroE 171342..172148 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  ACNFKJ_RS00840 yqeH 172162..173262 (-) 1101 WP_001280132.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25768.35 Da        Isoelectric Point: 9.3383

>NTDB_id=1101787 ACNFKJ_RS00805 WP_078059847.1 168103..168789(-) (comEA) [Staphylococcus aureus strain subspecie aureus F-182]
MVLLYQFLLRYKDFLAQWKLYTISAVVLIMVLIGFIFWRQDDYTSRDFENKDTVLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKAQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1101787 ACNFKJ_RS00805 WP_078059847.1 168103..168789(-) (comEA) [Staphylococcus aureus strain subspecie aureus F-182]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAGCTCAATGGAAGTTATATACTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
TTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGCACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

94.714

99.561

0.943
  comEA Staphylococcus aureus N315

94.714

99.561

0.943

Multiple sequence alignment