Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   ACNFKH_RS02760 Genome accession   NZ_CP182513
Coordinates   512100..512750 (-) Length   216 a.a.
NCBI ID   WP_004306726.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AS-83-79     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 507100..517750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS02725 - 507477..508481 (+) 1005 WP_079263877.1 hypothetical protein -
  ACNFKH_RS02730 tlyA 508478..509239 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  ACNFKH_RS02735 ribF 509205..510059 (+) 855 WP_032585920.1 bifunctional riboflavin kinase/FAD synthetase -
  ACNFKH_RS02740 cmoA 510046..510756 (+) 711 WP_079263875.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  ACNFKH_RS02745 - 510773..510967 (-) 195 WP_079263876.1 EexN family lipoprotein -
  ACNFKH_RS02750 - 510958..511398 (-) 441 WP_004306720.1 EexN family lipoprotein -
  ACNFKH_RS02755 - 511457..512089 (-) 633 WP_004306723.1 trimeric intracellular cation channel family protein -
  ACNFKH_RS02760 CJE0566 512100..512750 (-) 651 WP_004306726.1 DNA/RNA non-specific endonuclease Regulator
  ACNFKH_RS02765 nth 512747..513373 (-) 627 WP_004306729.1 endonuclease III -
  ACNFKH_RS02770 peb4 513454..514275 (+) 822 WP_004306734.1 peptidylprolyl isomerase PEB4 -
  ACNFKH_RS02775 fbaA 514275..515339 (+) 1065 WP_004306738.1 class II fructose-bisphosphate aldolase -
  ACNFKH_RS02780 - 515434..516876 (+) 1443 WP_004306741.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25475.19 Da        Isoelectric Point: 9.8188

>NTDB_id=1101755 ACNFKH_RS02760 WP_004306726.1 512100..512750(-) (CJE0566) [Campylobacter jejuni strain AS-83-79]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1101755 ACNFKH_RS02760 WP_004306726.1 512100..512750(-) (CJE0566) [Campylobacter jejuni strain AS-83-79]
ATGAAAATTTTCATCTTTTTGCTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCGCAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment