Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACNI3D_RS06025 Genome accession   NZ_CP182343
Coordinates   1164348..1166180 (-) Length   610 a.a.
NCBI ID   WP_419768613.1    Uniprot ID   -
Organism   MAG: Arcobacter sp. isolate Pygsuia-1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1159348..1171180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI3D_RS06000 (ACNI3D_06000) - 1160587..1161225 (-) 639 WP_129101175.1 adenylate kinase -
  ACNI3D_RS06005 (ACNI3D_06005) - 1161339..1161908 (+) 570 WP_129101176.1 adenylate kinase -
  ACNI3D_RS06010 (ACNI3D_06010) - 1161908..1162663 (+) 756 WP_419768610.1 competence/damage-inducible protein A -
  ACNI3D_RS06015 (ACNI3D_06015) - 1162660..1163310 (-) 651 WP_419768611.1 tetratricopeptide repeat protein -
  ACNI3D_RS06020 (ACNI3D_06020) - 1163307..1164329 (-) 1023 WP_419768612.1 alanine racemase -
  ACNI3D_RS06025 (ACNI3D_06025) uvrC 1164348..1166180 (-) 1833 WP_419768613.1 excinuclease ABC subunit UvrC Machinery gene
  ACNI3D_RS06030 (ACNI3D_06030) - 1166302..1166694 (+) 393 WP_419768614.1 tautomerase -
  ACNI3D_RS06035 (ACNI3D_06035) - 1166745..1167023 (+) 279 WP_164969774.1 antibiotic biosynthesis monooxygenase family protein -
  ACNI3D_RS06040 (ACNI3D_06040) - 1167037..1167507 (-) 471 WP_419768615.1 DnaJ domain-containing protein -
  ACNI3D_RS06045 (ACNI3D_06045) - 1167971..1168237 (+) 267 WP_129101184.1 DnaJ domain-containing protein -
  ACNI3D_RS06050 (ACNI3D_06050) - 1168249..1169118 (+) 870 WP_419768616.1 ADP-ribosylglycohydrolase family protein -
  ACNI3D_RS06055 (ACNI3D_06055) - 1169128..1169751 (-) 624 WP_419768617.1 DsbA family protein -
  ACNI3D_RS06060 (ACNI3D_06060) - 1169853..1170296 (+) 444 WP_129101187.1 phosphate-starvation-inducible PsiE family protein -
  ACNI3D_RS06065 (ACNI3D_06065) - 1170283..1171167 (+) 885 WP_419768618.1 radical SAM protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 71090.11 Da        Isoelectric Point: 8.8096

>NTDB_id=1101279 ACNI3D_RS06025 WP_419768613.1 1164348..1166180(-) (uvrC) [MAG: Arcobacter sp. isolate Pygsuia-1]
MDLENKLKQLPNDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFTPELRPADKLGPRIYKMITQVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIYVDLNEDFPRLEITRKVLKGSNIKYFGPYSSGARDILDSIYETFPLVQKKSC
IKGKEACLFFQIKKCLAPCENRVSKEDYTNILNDSMEYIYNKSKLISKLKVKMQEYSDDFRFEEAMKIRDRIKTIEKSEI
KTGMDLATNENLDIFAIKNINSKAVIVRMFIRDGKLASSSHDYLKSNVEETEEFDYEEAYKRAIINYYSNEIPIIPKEIL
IAKELEDMEDIKEFLKNKLVKKINIINPKLGKKKDIIDVALNNCDELLRIDSTKGTNTLYEEIKELFNLSQIPNRVESFD
NSHMMGQATVGAMVVWDNDKFVKSDFRHYNLEAHDEYSQMREMLIRRVENFEKNPAPDLWVIDGGSTLLKLAYDIVQSVG
IKLDIIAIAKEKIDFKAHRAKGAAKDIVHYKQGEEITSIKLLTSDRRLHFVQRQRDEAHRFVINFHKKQKRAEDKQISLL
NIKGIGEAKVKKLLLYFGTFEKIKEASIETLKEVLNEKDSILISNHFNQN

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1101279 ACNI3D_RS06025 WP_419768613.1 1164348..1166180(-) (uvrC) [MAG: Arcobacter sp. isolate Pygsuia-1]
ATGGATTTAGAAAACAAACTTAAACAGCTTCCAAATGATGCAGGTGTATATCAATACTTTGATAAAGATGGACATTTACT
TTATGTTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCATACTTCAAATTTACTCCCGAACTTCGACCTGCTGATA
AATTAGGTCCTAGAATTTATAAAATGATAACTCAAGTAGAATCATGTGAATGGATTGTAGTACCAAATGAACATGATGCC
CTGATTTTAGAAAACTCCCTAATAAAACAATTAAAACCAAAATATAATATTCTTCTACGTGATGATAAAACTTACCCTTA
TATTTATGTTGATTTAAATGAGGATTTCCCAAGATTAGAAATTACAAGAAAAGTTTTAAAAGGTTCAAATATAAAATATT
TTGGTCCCTACTCATCTGGTGCCAGAGATATATTAGACTCAATATATGAGACTTTTCCACTTGTACAAAAGAAATCATGT
ATAAAAGGAAAAGAGGCTTGCTTGTTTTTTCAAATCAAAAAATGCTTAGCCCCATGTGAAAATAGAGTTTCAAAAGAAGA
TTATACAAATATTTTAAATGATTCTATGGAGTATATTTACAACAAATCAAAACTAATCTCAAAACTTAAAGTAAAAATGC
AAGAGTATTCAGATGATTTTCGTTTTGAAGAGGCTATGAAAATAAGAGATAGAATAAAAACTATAGAAAAATCAGAGATA
AAAACAGGTATGGATTTAGCTACAAATGAAAACTTAGATATTTTTGCTATTAAAAATATCAACTCAAAAGCTGTGATTGT
AAGAATGTTTATTAGAGATGGGAAATTGGCTTCTTCTTCACATGATTATCTTAAGTCAAATGTAGAAGAAACTGAAGAGT
TTGATTACGAAGAAGCATATAAAAGAGCTATAATCAACTATTATTCAAATGAAATTCCTATCATTCCAAAAGAGATACTT
ATTGCTAAAGAACTTGAAGATATGGAAGATATAAAAGAGTTCTTAAAAAATAAACTTGTTAAAAAGATAAATATTATCAA
TCCAAAACTTGGAAAGAAAAAAGACATAATAGATGTTGCTTTAAACAACTGTGACGAATTGTTGAGAATAGATAGTACAA
AAGGTACAAATACACTTTATGAAGAGATTAAAGAGTTATTTAATCTCTCTCAAATACCAAATAGAGTTGAAAGCTTTGAC
AACTCACATATGATGGGACAAGCGACTGTTGGTGCAATGGTTGTATGGGATAATGACAAATTTGTAAAAAGTGATTTTAG
ACACTACAACTTAGAAGCCCATGATGAATACTCTCAAATGAGAGAAATGCTAATACGAAGAGTTGAAAACTTTGAAAAAA
ATCCTGCACCAGATTTATGGGTAATTGATGGTGGATCTACTTTATTGAAACTTGCATATGATATTGTGCAATCAGTTGGT
ATAAAGTTAGATATCATTGCAATTGCAAAAGAAAAAATTGATTTTAAAGCCCATAGAGCAAAAGGTGCTGCAAAAGATAT
TGTTCATTATAAACAAGGTGAAGAAATTACTTCTATTAAATTATTAACTTCAGATAGAAGATTACACTTTGTACAAAGAC
AAAGGGATGAAGCTCATCGATTTGTTATCAATTTTCACAAAAAACAAAAAAGAGCAGAAGATAAACAAATCTCTTTATTA
AACATAAAAGGTATTGGTGAAGCAAAGGTTAAAAAACTTCTTCTTTATTTTGGAACCTTTGAAAAGATAAAAGAAGCATC
TATTGAAACTCTAAAAGAGGTTTTAAATGAAAAAGATAGTATTCTAATATCAAATCATTTTAATCAAAACTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.918

98.197

0.5

Multiple sequence alignment