Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACAK28_RS01705 Genome accession   NZ_AP031577
Coordinates   359477..360295 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JUNP403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354477..365295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK28_RS01670 - 355060..355189 (-) 130 Protein_320 hypothetical protein -
  ACAK28_RS01675 (JUNP403_0337) rpoZ 355228..355506 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK28_RS01680 (JUNP403_0338) gmk 355579..356208 (-) 630 WP_000015937.1 guanylate kinase -
  ACAK28_RS01685 (JUNP403_0339) ispH 356331..357281 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK28_RS01690 (JUNP403_0340) fimU 357451..357924 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK28_RS01695 (JUNP403_0341) pilV 357918..358478 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ACAK28_RS01700 (JUNP403_0342) pilW 358479..359480 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACAK28_RS01705 (JUNP403_0343) pilX 359477..360295 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK28_RS01710 (JUNP403_0344) pilY1 360307..364161 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  ACAK28_RS01715 (JUNP403_0345) pilY2 364174..364656 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ACAK28_RS01720 (JUNP403_0346) pilE 364653..365078 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=110116 ACAK28_RS01705 WP_000149374.1 359477..360295(+) (pilX) [Acinetobacter baumannii strain JUNP403]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=110116 ACAK28_RS01705 WP_000149374.1 359477..360295(+) (pilX) [Acinetobacter baumannii strain JUNP403]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment