Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACNVPQ_RS17275 Genome accession   NZ_CP182318
Coordinates   3482669..3483358 (-) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus velezensis strain Scm3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477669..3488358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVPQ_RS17240 fliW 3477759..3478190 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ACNVPQ_RS17245 - 3478220..3478789 (-) 570 WP_007407476.1 DUF6470 family protein -
  ACNVPQ_RS17250 flgL 3478881..3479798 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACNVPQ_RS17255 flgK 3479810..3481327 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  ACNVPQ_RS17260 - 3481343..3481825 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACNVPQ_RS17265 flgM 3481840..3482106 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNVPQ_RS17270 - 3482176..3482595 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ACNVPQ_RS17275 comFC 3482669..3483358 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ACNVPQ_RS17280 - 3483364..3483648 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  ACNVPQ_RS17285 comFA 3483706..3485091 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  ACNVPQ_RS17290 - 3485200..3486048 (-) 849 WP_094031329.1 DegV family protein -
  ACNVPQ_RS17295 degU 3486146..3486835 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACNVPQ_RS17300 degS 3486912..3488075 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=1101151 ACNVPQ_RS17275 WP_198161198.1 3482669..3483358(-) (comFC) [Bacillus velezensis strain Scm3]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1101151 ACNVPQ_RS17275 WP_198161198.1 3482669..3483358(-) (comFC) [Bacillus velezensis strain Scm3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTATTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGATAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment