Detailed information NTG1100899

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACM1ZW_RS01080
• Genome accession: NZ_CP182230
• Coordinates: 228290..230512 (-)
• Length: 740 a.a.
• NCBI ID: WP_416740031.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NFX71
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 223290..235512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM1ZW_RS01045 (ACM1ZW_01045)	murB	223664..224683 (-)	1020	WP_416740028.1	UDP-N-acetylmuramate dehydrogenase	-
ACM1ZW_RS01050 (ACM1ZW_01050)	-	224680..225144 (-)	465	WP_017340125.1	low molecular weight protein-tyrosine-phosphatase	-
ACM1ZW_RS01055 (ACM1ZW_01055)	kdsB	225144..225908 (-)	765	WP_416740029.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACM1ZW_RS01060 (ACM1ZW_01060)	-	225905..226090 (-)	186	WP_007945752.1	Trm112 family protein	-
ACM1ZW_RS01065 (ACM1ZW_01065)	lpxK	226115..227125 (-)	1011	WP_416740030.1	tetraacyldisaccharide 4'-kinase	-
ACM1ZW_RS01070 (ACM1ZW_01070)	-	227125..227556 (-)	432	WP_414878048.1	ExbD/TolR family protein	-
ACM1ZW_RS01075 (ACM1ZW_01075)	exbB	227553..228191 (-)	639	WP_017340129.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACM1ZW_RS01080 (ACM1ZW_01080)	comA	228290..230512 (-)	2223	WP_416740031.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACM1ZW_RS01085 (ACM1ZW_01085)	-	230649..231167 (+)	519	WP_017340131.1	DUF2062 domain-containing protein	-
ACM1ZW_RS01090 (ACM1ZW_01090)	-	231352..232131 (-)	780	WP_008152390.1	ABC transporter permease	-
ACM1ZW_RS01095 (ACM1ZW_01095)	-	232128..233060 (-)	933	WP_017340132.1	ABC transporter ATP-binding protein	-
ACM1ZW_RS01100 (ACM1ZW_01100)	-	233194..233817 (-)	624	WP_414878046.1	glutathione S-transferase family protein	-
ACM1ZW_RS01105 (ACM1ZW_01105)	-	233861..234520 (-)	660	WP_017340134.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 81231.37 Da
• Isoelectric Point: 10.0701

>NTDB_id=1100899 ACM1ZW_RS01080 WP_416740031.1 228290..230512(-) (comA) [Pseudomonas sp. NFX71]
MRTGMMALALGLLALRFLPVLPPVWLWLVLPVVGLMVLPFRTYPVAFFLFGFSWAGANAQWALDDRLSANLDGETRWVEG
WVTGLPQNNEGVVRFELVDARSRQAKVPSLMRLAWYDGSPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGQRLAEARWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLGREDWQVLQDTGTVHLLVISGQHVGLLAGVVYLL
IAGLARYGMWPNRLPWLPWACGLAFVAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLVLALNAVLLLDPL
VSLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLVLGLPISLSGPVANLFAVPWISLLVLPPAL
LGTLLLPLPYVGEGLLWLAGGLIDWLFKGLGLMAGQLPAWVPVAIPLGTWALGSLGAFLLLMPRGVPLRPLGWPLLLLLV
FPPRPLLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPTLHKLGVDGLDLMLLSHADADHAGGA
RAVALGLPVTRVLSGDPVALPVELHAEACESGRQWTWDDVRFQLWQWPSASDSNQKSCVLQIEANGERMLLTGDIDSAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLAALQPKAVLISRGNGNSFGHPHPTVMARYKKRGMAIHDSAEQGAIRLHL
GRFTPAWTMRQERRFWRSLP

Nucleotide

• Length: 2223 bp

>NTDB_id=1100899 ACM1ZW_RS01080 WP_416740031.1 228290..230512(-) (comA) [Pseudomonas sp. NFX71]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGTGTTACCGCCGGTCTGGTTATG
GCTGGTGTTGCCTGTAGTGGGATTGATGGTGCTTCCGTTCCGGACGTATCCAGTGGCTTTTTTCCTGTTCGGCTTCAGTT
GGGCGGGCGCGAATGCGCAGTGGGCGCTGGATGATCGACTGTCGGCGAATCTCGATGGCGAAACCCGTTGGGTCGAAGGC
TGGGTGACGGGATTACCGCAGAATAATGAAGGTGTTGTGCGTTTCGAGTTGGTGGACGCCCGGTCGCGACAGGCAAAAGT
GCCTTCACTGATGCGCCTGGCCTGGTACGACGGATCACCGGTCAACAGTGGCGAACGCTGGCGGCTGGCGGTGAAATTGA
AGCGTCCTGCCGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTGCTGGCGCAACGCATCGGTGCAACCGGG
ACCGTCAAGGATGGCCAGCGTCTTGCCGAAGCCCGGTGGGCCTGGCGTGACGGCATCCGCCAACGCTTGCAAGCCGTGGA
CGCTCAGGGGCGAACCGGTGCACTGACGGCACTGGTGCTGGGGGATGGCGCCGGGCTTGGTCGCGAGGACTGGCAGGTGT
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACGTCGGTCTGCTGGCAGGCGTGGTGTATCTGCTG
ATCGCCGGGCTGGCTCGCTACGGTATGTGGCCGAATCGCTTGCCGTGGCTGCCATGGGCGTGCGGACTGGCATTCGTCGC
TGCCCTTGGTTACGGACTGCTGGCAGGATTCGAAGTACCGGTGCGGCGAGCCTGCGTAATGATCGGGCTGGTGCTGTTGT
GGCGCCTGCGATTTCGCCACCTCGGTGCCTGGTGGCCGTTGGTGCTGGCGCTCAACGCAGTGTTGTTGCTGGATCCGCTG
GTGAGTCTGCAACCGGGTTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGCGGGCGCCTAGGCCC
TTGGCGGTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGCCTGGGCCCGCTGCTGCTGGTGCTGGGAC
TGCCGATCAGTCTCAGCGGGCCGGTCGCCAATCTGTTTGCAGTGCCCTGGATCAGTTTGCTGGTCTTGCCGCCAGCGTTG
CTGGGGACCCTGTTGTTACCGCTGCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCGGGCGGGTTGATCGACTGGCTGTT
CAAGGGCCTTGGGCTGATGGCTGGCCAATTGCCCGCGTGGGTGCCCGTGGCGATTCCATTGGGGACATGGGCATTGGGCT
CCCTCGGCGCGTTTCTGTTGTTGATGCCGCGTGGCGTACCGCTGCGCCCGCTGGGTTGGCCGCTGTTGCTGTTGCTGGTT
TTTCCACCCCGGCCACTGTTGCCAGAGGGGATCGCCGAAGTCTGGCAACTGGATGTCGGTCAGGGGTTGGCTATCCTGGT
GCGGACTCGCCATCACACGCTGTTGTATGACACCGGCCCGCGCTTCGGCGACTTCGACCTCGGCGAGCGAGTGGTGCTGC
CCACCTTGCACAAACTGGGCGTGGACGGACTCGACCTGATGTTGCTCAGCCACGCCGATGCCGATCATGCCGGCGGTGCG
CGAGCGGTTGCCCTGGGCTTGCCGGTGACGCGAGTGCTCAGCGGCGACCCCGTGGCCTTGCCCGTCGAATTGCACGCCGA
GGCCTGCGAGAGTGGCCGGCAATGGACGTGGGACGACGTGAGGTTTCAGCTCTGGCAATGGCCTTCTGCCTCGGACAGCA
ATCAAAAATCCTGTGTCCTGCAGATCGAAGCCAATGGCGAACGCATGCTGCTGACGGGGGATATCGACAGCGCCGCCGAA
CGGGCCCTGCTTGACAGTCCGCTGGCCGTGCCCACCGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTTGCCGCGTTGCAGCCCAAAGCGGTGCTGATCTCGCGCGGCAACGGCAATTCCTTCGGTCATCCGCATC
CTACGGTCATGGCCCGTTATAAAAAACGCGGCATGGCGATCCATGACAGCGCCGAGCAAGGCGCCATTCGTCTGCACCTC
GGACGCTTCACGCCAGCATGGACAATGCGTCAGGAACGGCGTTTCTGGCGCTCCCTGCCATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.693	96.351	0.604
comA	Ralstonia pseudosolanacearum GMI1000	33.933	100	0.382