Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACAK35_RS01730 Genome accession   NZ_AP031576
Coordinates   359857..360597 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain JUNP402     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354857..365597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK35_RS01715 (JUNP402_0342) ponA 355444..357999 (-) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  ACAK35_RS01720 (JUNP402_0343) pilM 358161..359219 (+) 1059 WP_005115308.1 pilus assembly protein PilM Machinery gene
  ACAK35_RS01725 (JUNP402_0344) pilN 359219..359860 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ACAK35_RS01730 (JUNP402_0345) pilO 359857..360597 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACAK35_RS01735 (JUNP402_0346) pilP 360608..361135 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ACAK35_RS01740 (JUNP402_0347) pilQ 361198..363363 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  ACAK35_RS01745 (JUNP402_0348) aroK 363375..363944 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ACAK35_RS01750 (JUNP402_0349) aroB 363973..365055 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=110063 ACAK35_RS01730 WP_000076101.1 359857..360597(+) (pilO) [Acinetobacter baumannii strain JUNP402]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=110063 ACAK35_RS01730 WP_000076101.1 359857..360597(+) (pilO) [Acinetobacter baumannii strain JUNP402]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment