Detailed information NTG1099967

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACNFWM_RS20765
• Genome accession: NZ_CP181388
• Coordinates: 4399456..4400904 (+)
• Length: 482 a.a.
• NCBI ID: WP_132648640.1
• Uniprot ID: A0A4V2SGB1
• Organism: Rubrivivax gelatinosus isolate YF10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4394456..4405904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFWM_RS20745	ffh	4395119..4396486 (-)	1368	WP_132648644.1	signal recognition particle protein	-
ACNFWM_RS20750	-	4396532..4397350 (+)	819	WP_132648643.1	cytochrome C assembly family protein	-
ACNFWM_RS20755	-	4397347..4397580 (+)	234	WP_132648642.1	PP0621 family protein	-
ACNFWM_RS20760	-	4397591..4399459 (+)	1869	WP_132648641.1	sensor histidine kinase	-
ACNFWM_RS20765	pilR	4399456..4400904 (+)	1449	WP_132648640.1	sigma-54-dependent transcriptional regulator	Regulator
ACNFWM_RS20770	ampD	4400906..4401493 (+)	588	WP_132648639.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACNFWM_RS20775	-	4401781..4404633 (+)	2853	WP_132648638.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 482 a.a.
• Molecular weight: 52170.50 Da
• Isoelectric Point: 5.6828

>NTDB_id=1099967 ACNFWM_RS20765 WP_132648640.1 4399456..4400904(+) (pilR) [Rubrivivax gelatinosus isolate YF10]
MSAATTPRLLVVDDEPDLRTLYELTLLREGYDVESAETVEEAWAALQSRRFQLLITDMRLPDGTGLDLLRRLEDAGRGEK
GIVITAYGSAENAVEALKSGAYDYLTKPVDLRQFRAVVASALGRTPAPDGAPRAARPAEARHTLPARRALERMAGDSAAL
QQVRSLVGKVARSMAPVLVHGESGTGKELVARAIHELSPRHAMPFVAVNCGAIPESLLEAEFFGYRRGAFTGAVEDREGF
FQAAQGGTLFLDEIGDLPLAMQSKLLRAVQERAVRPLGAPTEQAVNVRIVSATHKDLAVEVHAGRFRQDLFYRLNVIEIV
VPPLRERLEDLPAIAAAVLERIAGDAGVSPPPVLSAEALAHLSRYAFPGNVRELENLLHRAVTLAGGSVVECRDLGLPEV
AFADSAHLELDAPLCEPVRAATSEAPLPADLAAHLDQVEREILERALERHRYNRTAAGASLGLSLRQMRYRMARLGIGSG
DD

Nucleotide

• Length: 1449 bp

>NTDB_id=1099967 ACNFWM_RS20765 WP_132648640.1 4399456..4400904(+) (pilR) [Rubrivivax gelatinosus isolate YF10]
GTGAGCGCTGCCACGACGCCCCGTCTGCTCGTCGTCGACGACGAGCCCGACCTGCGCACGCTCTACGAGCTGACGCTGCT
GCGCGAGGGCTACGACGTCGAAAGCGCGGAGACCGTCGAGGAGGCCTGGGCGGCCCTGCAGTCGCGCCGCTTCCAGCTGC
TGATCACCGACATGCGCCTGCCCGACGGCACCGGGCTGGACCTGCTGCGCCGGCTGGAGGACGCCGGGCGCGGCGAGAAG
GGCATCGTCATCACCGCCTACGGATCGGCCGAGAACGCCGTCGAGGCGCTGAAATCGGGCGCCTACGACTATCTGACGAA
GCCGGTGGACCTGCGCCAGTTCCGCGCCGTGGTGGCGTCGGCGCTGGGGCGCACGCCGGCGCCCGATGGCGCCCCCCGTG
CGGCGCGGCCGGCCGAGGCGCGCCACACGCTGCCGGCGCGCCGTGCGCTCGAGCGCATGGCCGGCGACTCGGCGGCGCTT
CAGCAGGTGCGCAGCCTGGTCGGCAAGGTGGCGCGCAGCATGGCGCCGGTGCTGGTGCACGGCGAGTCGGGCACCGGCAA
GGAGCTGGTCGCGCGTGCGATCCACGAACTCTCGCCGCGCCACGCGATGCCATTCGTCGCTGTCAACTGCGGGGCGATCC
CCGAGTCGCTGCTCGAGGCCGAGTTCTTCGGCTACCGGCGCGGCGCTTTCACCGGCGCCGTCGAGGACCGCGAAGGCTTC
TTCCAGGCCGCGCAGGGCGGCACGCTCTTCCTCGACGAGATCGGCGACCTGCCGCTGGCCATGCAGAGCAAGCTGCTGCG
TGCCGTTCAGGAGCGTGCGGTGCGACCGCTCGGTGCCCCCACAGAACAGGCGGTCAACGTGCGCATCGTCAGCGCCACGC
ACAAGGACCTTGCCGTCGAAGTCCATGCGGGCCGTTTCCGCCAGGATCTGTTTTACCGCCTGAACGTCATCGAGATCGTC
GTTCCGCCGCTGCGCGAGCGCCTGGAGGACCTGCCGGCGATCGCCGCGGCGGTGCTCGAGCGCATCGCCGGTGATGCCGG
GGTGTCGCCGCCGCCCGTGCTGTCGGCCGAGGCGCTGGCGCACCTGTCGCGTTACGCCTTCCCGGGCAACGTGCGCGAAC
TGGAGAACCTGCTGCACCGCGCGGTCACGCTGGCCGGCGGCAGCGTTGTCGAGTGCCGTGACCTGGGGCTGCCCGAGGTC
GCTTTCGCCGATTCGGCGCACCTCGAACTCGACGCCCCCCTGTGCGAGCCCGTGCGTGCCGCGACGAGCGAGGCGCCGCT
GCCTGCGGACCTCGCCGCCCACCTCGACCAGGTGGAGCGCGAGATCCTCGAGCGCGCGCTCGAGCGTCACCGCTACAACC
GCACCGCCGCCGGCGCCAGCCTGGGGCTGTCGCTGCGCCAGATGCGCTACCGCATGGCGCGGCTGGGCATCGGCAGCGGC
GACGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (435-474)

• Response regulator receiver domain (Response_reg) (10-118)

• Sigma-54 interaction domain (Sigma54_activat) (154-319)

3D structure

• AlphaFold DB: A0A4V2SGB1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.239	97.303	0.508
pilR	Acinetobacter baumannii strain A118	39.754	100	0.402