Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACNFWN_RS03800 Genome accession   NZ_CP181387
Coordinates   780604..781956 (+) Length   450 a.a.
NCBI ID   WP_132649678.1    Uniprot ID   A0A4R2LTN4
Organism   Rubrivivax gelatinosus isolate AJ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775604..786956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFWN_RS03775 - 776053..776787 (+) 735 WP_132649673.1 response regulator -
  ACNFWN_RS03780 - 776792..777685 (-) 894 WP_132649674.1 DMT family transporter -
  ACNFWN_RS03785 lplT 777675..778952 (-) 1278 WP_132649675.1 lysophospholipid transporter LplT -
  ACNFWN_RS03790 alr 779093..780181 (+) 1089 WP_132649676.1 alanine racemase -
  ACNFWN_RS03795 arfB 780181..780591 (+) 411 WP_132649677.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  ACNFWN_RS03800 radA 780604..781956 (+) 1353 WP_132649678.1 DNA repair protein RadA Machinery gene
  ACNFWN_RS03805 - 781959..782723 (+) 765 WP_132649679.1 metallophosphoesterase family protein -
  ACNFWN_RS03810 - 782720..783127 (+) 408 WP_132649680.1 hypothetical protein -
  ACNFWN_RS03815 - 783172..784095 (+) 924 WP_132649681.1 branched-chain amino acid transaminase -
  ACNFWN_RS03820 - 784100..784303 (+) 204 WP_132649682.1 zinc-finger domain-containing protein -
  ACNFWN_RS03825 - 784462..784872 (-) 411 WP_132649683.1 hypothetical protein -
  ACNFWN_RS03830 - 784884..786179 (-) 1296 WP_132649684.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 46979.30 Da        Isoelectric Point: 7.5843

>NTDB_id=1099929 ACNFWN_RS03800 WP_132649678.1 780604..781956(+) (radA) [Rubrivivax gelatinosus isolate AJ1]
MAKTIYTCRECGGTSPKWLGKCPACGAWNSLDEGLAEAATKNNRFQALARSQPVATLADIDAAEVARTPTGQEELDRVLG
GGIVAGGVTLIGGDPGIGKSTLLLQALDALSAVMPVLYVTGEESGAQVALRARRLGLAGAKVRVVAEISLEKILATLETE
QPAFCVIDSIQTLYSDQLTSAPGSVAQVRECAAQLTRVAKTGGCAMVLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTHS
SFRLVRAIKNRFGAVNEIGVFAMTEKGLRGVSNPSAIFLSAHGEPVSGSCVLVTLEGTRPLLVEIQALVDSGGASPRRLS
VGLDRDRLAMLLAVLHRHAGVSCMDQDVFVNAVGGVRIAEPAADLAVLLSITSSLRGKPLPRGFVAFGEVGLAGEVRPAP
RGQERLKEAAKLGFSVAVVPKANAPKKPVEGLTVHAVERIEQAIDIVRGL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=1099929 ACNFWN_RS03800 WP_132649678.1 780604..781956(+) (radA) [Rubrivivax gelatinosus isolate AJ1]
GTGGCCAAGACGATCTACACCTGCCGCGAGTGCGGCGGCACCAGCCCCAAGTGGCTGGGCAAGTGCCCGGCCTGCGGCGC
CTGGAACTCGCTCGACGAGGGCCTGGCCGAGGCGGCGACGAAGAACAACCGCTTCCAGGCGCTGGCCAGGAGCCAGCCGG
TGGCGACGCTGGCCGACATCGACGCCGCCGAGGTCGCGCGCACGCCCACCGGCCAGGAGGAACTCGACCGCGTGCTCGGC
GGCGGCATCGTCGCCGGCGGCGTGACCCTGATCGGCGGCGACCCCGGCATCGGCAAGAGCACGCTGCTCCTGCAGGCGCT
GGACGCGCTGTCGGCGGTGATGCCGGTGCTCTACGTCACCGGCGAGGAATCGGGCGCCCAGGTCGCGCTGCGCGCGCGCC
GGCTCGGGCTGGCGGGTGCCAAGGTGCGTGTCGTCGCCGAGATCTCGCTGGAGAAGATCCTGGCGACGCTGGAGACCGAG
CAGCCGGCCTTCTGCGTCATCGATTCGATCCAGACGCTGTATTCGGACCAGCTGACGTCGGCGCCGGGCTCGGTGGCCCA
GGTGCGCGAATGCGCCGCGCAGCTCACGCGCGTGGCCAAGACCGGCGGCTGCGCGATGGTGCTCGTCGGCCACGTCACCA
AGGAAGGCGCGCTGGCCGGTCCGCGGGTGCTGGAGCACATCGTCGACACGGTGCTGTACTTCGAGGGCGACACGCATTCG
AGCTTTCGCCTGGTGCGGGCGATCAAGAACCGCTTCGGCGCCGTCAACGAGATCGGCGTCTTCGCGATGACCGAGAAGGG
GCTGCGCGGCGTCAGCAACCCGAGCGCGATCTTCCTGTCGGCGCACGGCGAGCCGGTGTCGGGCTCCTGCGTGCTCGTCA
CGCTGGAAGGCACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACAGCGGCGGCGCCAGCCCGCGGCGGCTGTCG
GTGGGCCTGGACCGCGACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCACGCTGGCGTCTCGTGCATGGACCAGGA
CGTGTTCGTCAACGCGGTGGGCGGCGTGCGCATCGCCGAGCCGGCGGCCGACCTGGCGGTGCTGCTGTCGATCACGAGTT
CGCTGCGCGGCAAGCCGCTGCCGCGTGGTTTCGTCGCCTTCGGCGAGGTGGGTCTGGCCGGCGAGGTGCGCCCGGCGCCG
CGTGGCCAGGAGCGGCTGAAGGAAGCCGCCAAGCTGGGTTTCTCGGTCGCCGTCGTGCCCAAGGCCAACGCGCCGAAGAA
GCCGGTCGAAGGCCTTACGGTGCACGCCGTCGAGCGCATCGAGCAGGCGATCGACATCGTGCGCGGGCTGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2LTN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.491
  radA Streptococcus mitis NCTC 12261

47.178

98.444

0.464
  radA Streptococcus pneumoniae D39

49.286

93.333

0.46
  radA Streptococcus pneumoniae TIGR4

49.286

93.333

0.46
  radA Streptococcus mitis SK321

49.286

93.333

0.46
  radA Streptococcus pneumoniae R6

49.286

93.333

0.46
  radA Streptococcus pneumoniae Rx1

49.286

93.333

0.46

Multiple sequence alignment