Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABXS94_RS01570 Genome accession   NZ_AP031566
Coordinates   350337..350972 (-) Length   211 a.a.
NCBI ID   WP_136144659.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 349321..350199 350337..350972 flank 138


Gene organization within MGE regions


Location: 349321..350972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS01565 (PT23B2_02960) - 349321..350199 (-) 879 WP_004973252.1 IS982-like element ISAba4 family transposase -
  ABXS94_RS01570 (PT23B2_02970) comF 350337..350972 (-) 636 WP_136144659.1 phosphoribosyltransferase family protein Machinery gene

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24597.64 Da        Isoelectric Point: 9.7066

>NTDB_id=109992 ABXS94_RS01570 WP_136144659.1 350337..350972(-) (comF) [Acinetobacter towneri strain PT23-B2]
MTQPINLLQCGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRFRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=109992 ABXS94_RS01570 WP_136144659.1 350337..350972(-) (comF) [Acinetobacter towneri strain PT23-B2]
ATGACTCAGCCGATCAATCTACTACAATGCGGCATACAATGGCTGCGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTTTCGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.658

91.469

0.564
  comF Acinetobacter baumannii D1279779

61.14

91.469

0.559

Multiple sequence alignment