Detailed information NTG1099919

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACNFWO_RS03925
• Genome accession: NZ_CP181386
• Coordinates: 843037..844485 (+)
• Length: 482 a.a.
• NCBI ID: WP_132648640.1
• Uniprot ID: A0A4V2SGB1
• Organism: Rubrivivax gelatinosus isolate YF6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 838037..849485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFWO_RS03905	ffh	838700..840067 (-)	1368	WP_132648644.1	signal recognition particle protein	-
ACNFWO_RS03910	-	840113..840931 (+)	819	WP_132648643.1	cytochrome C assembly family protein	-
ACNFWO_RS03915	-	840928..841161 (+)	234	WP_132648642.1	PP0621 family protein	-
ACNFWO_RS03920	-	841172..843040 (+)	1869	WP_132648641.1	sensor histidine kinase	-
ACNFWO_RS03925	pilR	843037..844485 (+)	1449	WP_132648640.1	sigma-54-dependent transcriptional regulator	Regulator
ACNFWO_RS03930	ampD	844487..845074 (+)	588	WP_132648639.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACNFWO_RS03935	-	845362..848214 (+)	2853	WP_132648638.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 482 a.a.
• Molecular weight: 52170.50 Da
• Isoelectric Point: 5.6828

>NTDB_id=1099919 ACNFWO_RS03925 WP_132648640.1 843037..844485(+) (pilR) [Rubrivivax gelatinosus isolate YF6]
MSAATTPRLLVVDDEPDLRTLYELTLLREGYDVESAETVEEAWAALQSRRFQLLITDMRLPDGTGLDLLRRLEDAGRGEK
GIVITAYGSAENAVEALKSGAYDYLTKPVDLRQFRAVVASALGRTPAPDGAPRAARPAEARHTLPARRALERMAGDSAAL
QQVRSLVGKVARSMAPVLVHGESGTGKELVARAIHELSPRHAMPFVAVNCGAIPESLLEAEFFGYRRGAFTGAVEDREGF
FQAAQGGTLFLDEIGDLPLAMQSKLLRAVQERAVRPLGAPTEQAVNVRIVSATHKDLAVEVHAGRFRQDLFYRLNVIEIV
VPPLRERLEDLPAIAAAVLERIAGDAGVSPPPVLSAEALAHLSRYAFPGNVRELENLLHRAVTLAGGSVVECRDLGLPEV
AFADSAHLELDAPLCEPVRAATSEAPLPADLAAHLDQVEREILERALERHRYNRTAAGASLGLSLRQMRYRMARLGIGSG
DD

Nucleotide

• Length: 1449 bp

>NTDB_id=1099919 ACNFWO_RS03925 WP_132648640.1 843037..844485(+) (pilR) [Rubrivivax gelatinosus isolate YF6]
GTGAGCGCTGCCACGACGCCCCGTCTGCTCGTCGTCGACGACGAGCCCGACCTGCGCACGCTCTACGAGCTGACGCTGCT
GCGCGAGGGCTACGACGTCGAAAGCGCGGAGACCGTCGAGGAGGCCTGGGCGGCCCTGCAGTCGCGCCGCTTCCAGCTGC
TGATCACCGACATGCGCCTGCCCGACGGCACCGGGCTGGACCTGCTGCGCCGGCTGGAGGACGCCGGGCGCGGCGAGAAG
GGCATCGTCATCACCGCCTACGGATCGGCCGAGAACGCCGTCGAGGCGCTGAAATCGGGCGCCTACGACTATCTGACGAA
GCCGGTGGACCTGCGCCAGTTCCGCGCCGTGGTGGCGTCGGCGCTGGGGCGCACGCCGGCGCCCGATGGCGCCCCCCGTG
CGGCGCGGCCGGCCGAGGCGCGCCACACGCTGCCGGCGCGCCGTGCGCTCGAGCGCATGGCCGGCGACTCGGCGGCGCTT
CAGCAGGTGCGCAGCCTGGTCGGCAAGGTGGCGCGCAGCATGGCGCCGGTGCTGGTGCACGGCGAGTCGGGCACCGGCAA
GGAGCTGGTCGCGCGTGCGATCCACGAACTCTCGCCGCGCCACGCGATGCCATTCGTCGCTGTCAACTGCGGGGCGATCC
CCGAGTCGCTGCTCGAGGCCGAGTTCTTCGGCTACCGGCGCGGCGCTTTCACCGGCGCCGTCGAGGACCGCGAAGGCTTC
TTCCAGGCCGCGCAGGGCGGCACGCTCTTCCTCGACGAGATCGGCGACCTGCCGCTGGCCATGCAGAGCAAGCTGCTGCG
TGCCGTTCAGGAGCGTGCGGTGCGACCGCTCGGTGCCCCCACAGAACAGGCGGTCAACGTGCGCATCGTCAGCGCCACGC
ACAAGGACCTTGCCGTCGAAGTCCATGCGGGCCGTTTCCGCCAGGATCTGTTTTACCGCCTGAACGTCATCGAGATCGTC
GTTCCGCCGCTGCGCGAGCGCCTGGAGGACCTGCCGGCGATCGCCGCGGCGGTGCTCGAGCGCATCGCCGGTGATGCCGG
GGTGTCGCCGCCGCCCGTGCTGTCGGCCGAGGCGCTGGCGCACCTGTCGCGTTACGCCTTCCCGGGCAACGTGCGCGAAC
TGGAGAACCTGCTGCACCGCGCGGTCACGCTGGCCGGCGGCAGCGTTGTCGAGTGCCGTGACCTGGGGCTGCCCGAGGTC
GCTTTCGCCGATTCGGCGCACCTCGAACTCGACGCCCCCCTGTGCGAGCCCGTGCGTGCCGCGACGAGCGAGGCGCCGCT
GCCTGCGGACCTCGCCGCCCACCTCGACCAGGTGGAGCGCGAGATCCTCGAGCGCGCGCTCGAGCGTCACCGCTACAACC
GCACCGCCGCCGGCGCCAGCCTGGGGCTGTCGCTGCGCCAGATGCGCTACCGCATGGCGCGGCTGGGCATCGGCAGCGGC
GACGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (435-474)

• Response regulator receiver domain (Response_reg) (10-118)

• Sigma-54 interaction domain (Sigma54_activat) (154-319)

3D structure

• AlphaFold DB: A0A4V2SGB1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.239	97.303	0.508
pilR	Acinetobacter baumannii strain A118	39.754	100	0.402