Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABXS94_RS01030 Genome accession   NZ_AP031566
Coordinates   240341..241903 (-) Length   520 a.a.
NCBI ID   WP_353675399.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 235341..246903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS01015 (PT23B2_01950) gpmI 236053..237600 (+) 1548 WP_353675396.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABXS94_RS01020 (PT23B2_01960) - 237619..238788 (+) 1170 WP_353675397.1 S41 family peptidase -
  ABXS94_RS01025 (PT23B2_01970) pilR 238838..240271 (-) 1434 WP_353675398.1 sigma-54 dependent transcriptional regulator Regulator
  ABXS94_RS01030 (PT23B2_01980) pilS 240341..241903 (-) 1563 WP_353675399.1 ATP-binding protein Regulator
  ABXS94_RS01035 (PT23B2_01990) - 241944..242579 (-) 636 WP_004975702.1 response regulator -
  ABXS94_RS01040 (PT23B2_02000) - 242795..243886 (+) 1092 WP_286396891.1 serine hydrolase -
  ABXS94_RS01045 (PT23B2_02010) - 243990..245426 (-) 1437 WP_180022067.1 hypothetical protein -
  ABXS94_RS01050 (PT23B2_02020) thrC 245515..246654 (-) 1140 WP_286396896.1 threonine synthase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59193.60 Da        Isoelectric Point: 6.8883

>NTDB_id=109986 ABXS94_RS01030 WP_353675399.1 240341..241903(-) (pilS) [Acinetobacter towneri strain PT23-B2]
MPDLKQHSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGTQYQHPGLYLYTLVCYFIFSCLQLISYKYIPFKSTQQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFAITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNIGQSALL
AFLFWVVYGSGRIAVRRFQILENLNFSQSLELNRLQNINRYILEQTEMGYLVLDENCYVVLSNPAACHLLGIHPKYAHAT
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLFTGSDAAQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTTPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEPLSIQFDESQFRQVLINLIRNAIRHNAAQQPIEITAYPQATYIYIDVRDFGAGVASQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIE

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=109986 ABXS94_RS01030 WP_353675399.1 240341..241903(-) (pilS) [Acinetobacter towneri strain PT23-B2]
ATGCCAGATTTAAAACAACATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGTTTGCTGCTGATTACCCTACTCACCTTTCAGCAGCTTGGCACACAATATCAGCACCCAGGTTTATATCTATACA
CATTGGTCTGCTATTTTATTTTTAGCTGCCTGCAACTAATCAGCTATAAATATATTCCTTTTAAAAGCACGCAACAACTG
ACCCTGTTTTTTGCAGTCGATATTATCGCGCTCAGTAGCCTGACTTTTGCCAGCGATGGCCCTAATTTATATTTAAGTCT
GCTGTTTGCGATCACGATTTTTGCAGCATCACTCTTGCTGCAAAAGCGTAAAGCCTTAGCCATTACCCTCATCGCGATGA
TTATGGTGATTTACCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCGCTAAATAATATTGGTCAAAGTGCGCTATTG
GCATTTTTATTTTGGGTGGTTTATGGCAGTGGACGTATTGCAGTACGGCGTTTCCAAATTTTAGAAAATCTAAATTTTTC
GCAATCTTTGGAATTAAACCGCCTACAAAATATCAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTGGTTTTAG
ATGAAAATTGCTATGTCGTCCTCAGCAACCCTGCAGCCTGTCATCTGTTGGGGATTCATCCTAAATATGCGCACGCGACC
TATCCATTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAGTTACAAGATGGCGAGAAGTTTCAATT
CGAGTCGCAACTGAGTCATTTTCATGTGCATATTCAGGTACAAAAACTCAAAGTGCCACATCAAACGCTGACGTTATTGG
CGCTGCAAGATGGACGTAAAATCAATCAGCAAGTCCAGCAACTCAAATTAGCCGCCTTAGGACAACTCTCTGCCAGTATT
GCGCACGAAATTCGCAACCCTTTGGCAGCCATTGTACAAGCCAACGATTTATTTACAGGCAGTGATGCTGCACAGCAACA
ATTGCTGTCGGACATGATCAGCAAACAAGCGACACGGATTGATAAGATTATTCACGACACGCTGAGTATGGTCAAAAATA
AACAAACCACGCCTGTCGCGATTCAGCTCAATCAATTTTTGCCACAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAGCTTACACTGACCGAACCACTGAGCATCCAGTTTGATGAATCACAGTTTCGCCAAGTGCTGATTAACCTGAT
TCGTAACGCCATTCGACACAATGCTGCACAGCAGCCCATTGAGATTACGGCCTATCCGCAAGCAACTTATATTTATATTG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAGTCAAGATCTCCTCTATCTGTTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGCGAGGCGAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGTGCCATTGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

97.115

0.577

Multiple sequence alignment