Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACM530_RS13980 Genome accession   NZ_CP181333
Coordinates   3023200..3024567 (+) Length   455 a.a.
NCBI ID   WP_017139308.1    Uniprot ID   A0A2P8L9W2
Organism   Pseudomonas sp. NFX183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3018200..3029567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS13955 (ACM530_13955) - 3018320..3019030 (-) 711 WP_416364977.1 helix-turn-helix transcriptional regulator -
  ACM530_RS13960 (ACM530_13960) - 3019487..3020263 (+) 777 WP_404485099.1 ferredoxin--NADP reductase -
  ACM530_RS13965 (ACM530_13965) mscL 3020321..3020737 (-) 417 WP_106579295.1 large-conductance mechanosensitive channel protein MscL -
  ACM530_RS13970 (ACM530_13970) katB 3021025..3022566 (+) 1542 WP_242200363.1 catalase KatB -
  ACM530_RS13975 (ACM530_13975) - 3022625..3023164 (+) 540 WP_145162225.1 ankyrin repeat domain-containing protein -
  ACM530_RS13980 (ACM530_13980) radA 3023200..3024567 (+) 1368 WP_017139308.1 DNA repair protein RadA Machinery gene
  ACM530_RS13985 (ACM530_13985) - 3024595..3025329 (+) 735 WP_242200365.1 hypothetical protein -
  ACM530_RS13990 (ACM530_13990) - 3025355..3025672 (-) 318 WP_416365095.1 hypothetical protein -
  ACM530_RS13995 (ACM530_13995) - 3025679..3026047 (-) 369 WP_242200367.1 PilZ domain-containing protein -
  ACM530_RS14000 (ACM530_14000) - 3026222..3028288 (+) 2067 WP_106579291.1 carbon starvation CstA family protein -
  ACM530_RS14005 (ACM530_14005) - 3028304..3028501 (+) 198 WP_003194308.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48749.33 Da        Isoelectric Point: 7.1316

>NTDB_id=1099785 ACM530_RS13980 WP_017139308.1 3023200..3024567(+) (radA) [Pseudomonas sp. NFX183]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLKVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1099785 ACM530_RS13980 WP_017139308.1 3023200..3024567(+) (radA) [Pseudomonas sp. NFX183]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGCACCGAGTG
CGGCGCGTGGAACACCCTGACGGAAACCATGATCGAAAGCGGCGGCGCCGCAGCGCCCACCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCGCGTTTCTCCACCGCGTCCGGTGAGCTC
GACCGCGTGCTTGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAATCGACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CGATGCGCGCCCGCCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTTACCGAACAGCTGCAATCGGCGCC
GGGCGGCGTCTCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCATGTGACCAAAGAAGGCGCGCTGGCCGGTCCGCGGGTACTCGAACACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAATCCGATGGCCGTTTGCGGTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAACTGGGCGTGTTTGC
CATGACCGACCGTGGGCTTAAAGAAGTCTCCAACCCCTCGGCAATTTTTCTCACACGCGCACAAGAAGAAGTCCCAGGCA
GCGTGGTGATGGCAACGTGGGAAGGCACCCGCCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGCGTGACCCTCGGCCTGGACCAGAATCGTCTGGCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCCACCCACGACCAGGACGTGTTTCTCAACGTGGTCGGTGGGGTGAAAGTGCTGGAAACTGCCTCCGACCTGGCGTTGA
TGGCAGCGGTGATGTCCAGCCTGCGCAATAAACCGTTGCCCCACGACCTGCTGGTGTTTGGTGAGGTCGGCCTGTCGGGT
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGTTTGAAGGAGGCGGCCAAGCACGGCTTCAAGCGCGCGATTGTGCCCAA
GGGCAACGCGCCCAAGGAAATGCCGGCAGGGTTGAAGGTGATCGGTGTAACCCGCCTGGAGCAGGCGCTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8L9W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment