Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACM67B_RS09165 Genome accession   NZ_CP181247
Coordinates   1919693..1922920 (-) Length   1075 a.a.
NCBI ID   WP_416189356.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1914693..1927920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS09140 (ACM67B_09140) purH 1915085..1916665 (-) 1581 WP_416189351.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  ACM67B_RS09145 (ACM67B_09145) - 1916868..1917326 (-) 459 WP_416189352.1 GNAT family N-acetyltransferase -
  ACM67B_RS09150 (ACM67B_09150) - 1917407..1917652 (-) 246 WP_416189353.1 Fis family transcriptional regulator -
  ACM67B_RS09155 (ACM67B_09155) - 1917694..1918320 (-) 627 WP_416189354.1 LysE family transporter -
  ACM67B_RS09160 (ACM67B_09160) dusB 1918376..1919374 (-) 999 WP_416189355.1 tRNA dihydrouridine synthase DusB -
  ACM67B_RS09165 (ACM67B_09165) recC 1919693..1922920 (-) 3228 WP_416189356.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACM67B_RS09170 (ACM67B_09170) - 1923206..1924618 (+) 1413 WP_416189357.1 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 1075 a.a.        Molecular weight: 121807.07 Da        Isoelectric Point: 4.8599

>NTDB_id=1099583 ACM67B_RS09165 WP_416189356.1 1919693..1922920(-) (recC) [Neisseria sp. CCUG17229]
MFYLYQSNRLESLAALFSRIQQLQPLKHALTAEEIIVQSQGMRRYLSSYLAKELGVAANLKFSLPAGLTWRLMRELIPNV
PALSPFSPEVMRWRLLALFRSEAFQTASEFEIVRNKLQSYLRSGESADYHLAGQLADIFDQYLVYRPQWIDAWQEGKLLD
LGEDEIWQAQLWRFLDDGRQTVPHRVALWETLLANLSPQNLPERFFVFGISTMAPMYLQLLQAISEHCDVFVFALNPSEQ
HWGNVIEAAQILKSGDDVDLSQTGHPLLASLGKQGRDFFDFLSEIEMETPVYETESSGGATLLHRLQNDIQTLSLPSEND
VGQGDALLSDGSVRVVSAHSPLRELQILKDQLLHILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGRAADGTQALPYSIS
DVKLSRRQPLFYALEQVLALLESRFEVDKVLPLLDSHLVQNRFEISKDDLPLLHDTIAELNVHWGLDGKMRGAADDLFTW
QQALSRLVLGWMLPEGGDGMWQNVSAWHGDVNQLAVFSRFTAFMQTLADTAQTWQTAATVDEWIERVRQLHDGLFALGDD
DQYAAQQFEQALVKWQQEVALSGFSDGMLPQHTVIRHISRFLSSESQAGFLRGGMTFCSMVPMRSLPFKVLCLLGLNDGD
FPRNTKPTVFDLIAKHPKKGDRARRDDDRYLFLEAIISAREILYLSYVGRSIVNDAELAPSALLSELIDTIAEMTGKRSK
DLLANWVRQHPLQAFSTRYFQLQDSAKLISTRRDYAQALNEAAHRPSEKMTPFFKQPLGNEDELPSIVTQNEFIGFWKNP
VKAWLRHTLGWREPYRDEAWESAEPFEPEQGEKIADAYLEARRQRQDFAAVETKLNAESLLPTGELGSLWQQRFQAAAKQ
LDQDLLESPKVPPVAYELAFGQQTLSGSLNHVYQCGQILFRNKKLNAPERIALLLEHVLFNAVRPSESESGQSYFVSNDE
TVVYPEIDRQTAHDILQTWLTYYNIGQHRPLPFFAKTSLAAAEAYLKKQEWEAAQSAAIGAYFGNKVSPGQGSYTEVALV
FGHDDESPLDTPLFENLIIEMLVPLLIAVSTSKEA

Nucleotide


Download         Length: 3228 bp        

>NTDB_id=1099583 ACM67B_RS09165 WP_416189356.1 1919693..1922920(-) (recC) [Neisseria sp. CCUG17229]
ATGTTTTACCTTTATCAGTCCAACCGTCTCGAATCGCTCGCCGCTTTGTTTAGCCGCATTCAGCAGCTTCAGCCCTTGAA
ACACGCGTTGACGGCGGAAGAAATTATCGTGCAAAGCCAAGGCATGCGCCGTTATTTGAGCAGCTATTTGGCGAAAGAAC
TGGGCGTGGCGGCGAACCTGAAATTCAGTCTGCCGGCCGGTTTGACATGGCGCTTGATGCGCGAGCTGATTCCCAACGTG
CCTGCGCTCAGCCCGTTTTCCCCCGAAGTGATGCGCTGGCGGCTGTTGGCATTGTTCCGCAGCGAAGCGTTTCAGACGGC
GTCAGAATTTGAAATTGTGCGTAACAAGCTGCAAAGCTATTTACGCAGCGGCGAATCGGCGGATTATCATTTGGCCGGAC
AATTGGCCGATATTTTTGACCAATATTTGGTGTACCGTCCGCAATGGATTGATGCATGGCAGGAAGGCAAGCTGCTGGAT
TTGGGCGAAGATGAAATCTGGCAGGCGCAATTGTGGCGTTTTCTGGACGACGGCAGACAAACCGTGCCGCACCGCGTGGC
CTTGTGGGAAACCTTGCTGGCCAATTTGTCGCCGCAAAACCTGCCCGAACGCTTTTTCGTGTTCGGCATTTCTACCATGG
CGCCGATGTATTTGCAGCTTTTACAGGCCATTTCCGAGCATTGTGATGTGTTTGTGTTCGCGCTCAATCCGAGCGAGCAG
CATTGGGGCAATGTGATTGAAGCCGCGCAGATTTTGAAAAGCGGCGACGATGTTGATTTGAGCCAAACCGGCCATCCGCT
GCTGGCTTCATTGGGCAAGCAGGGGCGTGATTTCTTTGATTTTCTGTCGGAAATTGAGATGGAAACACCGGTGTACGAAA
CGGAAAGCAGCGGCGGAGCGACCTTGCTGCACCGTTTGCAAAACGACATTCAAACCTTGTCGCTGCCGTCTGAAAACGAT
GTCGGGCAGGGCGATGCGCTGCTTTCAGACGGCTCTGTCCGCGTGGTGTCGGCACACAGCCCTTTGCGCGAGCTGCAAAT
TTTGAAAGACCAACTGCTGCACATTCTGCACGAACATCCCGACTGGCAGCCGCACGACATCGCTGTGTTGACCCCGAATA
TCGAGCCGTATAGCCCGTTTATCGAAGCCGTGTTCGGCCGTGCGGCAGATGGCACGCAAGCCTTGCCGTATTCGATTTCC
GATGTGAAACTCAGCCGCCGCCAGCCACTTTTTTACGCCTTGGAACAAGTATTGGCCTTGCTGGAAAGCCGCTTTGAAGT
GGATAAAGTGCTGCCGTTGCTCGATAGCCATTTGGTGCAAAACCGCTTTGAAATCAGCAAAGACGATTTGCCGCTGCTGC
ACGACACCATCGCCGAACTCAACGTGCATTGGGGTTTGGATGGCAAGATGCGCGGCGCAGCGGATGATTTGTTTACCTGG
CAGCAGGCTTTGTCGCGCTTGGTGCTGGGCTGGATGCTGCCTGAAGGCGGCGACGGTATGTGGCAAAACGTCAGTGCGTG
GCACGGCGATGTCAACCAATTGGCTGTGTTCAGCCGCTTCACCGCCTTTATGCAGACCTTGGCCGACACCGCGCAAACAT
GGCAAACCGCCGCCACAGTGGATGAATGGATTGAACGCGTGCGCCAATTGCACGATGGCTTATTTGCCTTGGGCGACGAC
GACCAATATGCCGCGCAGCAATTCGAGCAAGCCTTGGTGAAATGGCAGCAAGAAGTGGCATTGTCAGGATTTTCAGACGG
CATGTTGCCGCAGCACACCGTTATCCGCCACATCAGCCGCTTTTTGAGCAGCGAAAGCCAAGCCGGATTTTTGCGCGGCG
GCATGACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCGTTTAAAGTATTGTGTTTATTGGGTTTGAACGACGGCGAT
TTCCCGCGCAACACCAAGCCGACCGTGTTTGACCTGATTGCCAAACACCCGAAAAAAGGCGACCGCGCCCGCCGTGATGA
CGACCGCTATCTGTTTCTCGAAGCCATCATCAGCGCGCGAGAGATTCTGTATTTGTCGTATGTCGGCCGCAGCATCGTCA
ACGATGCCGAGCTGGCACCTTCGGCCTTGTTGAGCGAACTCATCGACACCATCGCCGAAATGACCGGAAAACGCAGCAAA
GATTTGCTGGCAAACTGGGTGCGCCAACATCCGCTGCAAGCCTTTTCCACACGCTATTTCCAATTGCAAGATTCTGCCAA
GCTCATCAGCACACGTCGTGATTACGCCCAAGCTCTGAATGAAGCAGCACACAGGCCGTCTGAAAAGATGACGCCGTTTT
TCAAGCAACCTTTGGGCAATGAAGACGAACTGCCGAGCATCGTCACGCAAAACGAATTTATCGGCTTTTGGAAAAATCCG
GTCAAAGCATGGCTGCGCCATACCTTGGGCTGGCGTGAACCCTATCGCGATGAAGCATGGGAATCGGCCGAGCCGTTCGA
GCCGGAGCAGGGTGAAAAAATCGCCGACGCGTATCTGGAAGCGCGCCGACAGCGGCAGGATTTTGCTGCCGTCGAAACCA
AGCTTAACGCCGAAAGCCTGTTGCCTACCGGTGAACTGGGCAGCTTGTGGCAGCAGCGTTTCCAAGCCGCCGCCAAACAG
CTCGACCAAGATTTGCTCGAAAGCCCGAAAGTACCGCCGGTGGCCTATGAGTTGGCGTTCGGTCAGCAAACCCTAAGCGG
CAGCCTGAACCATGTGTATCAATGCGGCCAAATCCTGTTCCGCAACAAAAAGCTCAACGCCCCCGAGCGCATTGCCTTGC
TGTTGGAGCATGTGTTGTTCAATGCCGTGAGGCCGTCTGAAAGCGAAAGCGGCCAGAGCTATTTTGTGTCGAACGACGAA
ACCGTGGTTTATCCCGAAATCGACCGCCAAACCGCCCATGACATCCTGCAAACATGGCTTACATACTACAACATCGGCCA
ACATCGCCCCTTGCCGTTTTTCGCCAAAACCAGCTTGGCCGCTGCCGAAGCCTACCTGAAAAAACAAGAATGGGAAGCCG
CACAATCTGCTGCCATCGGTGCATATTTTGGTAACAAAGTAAGCCCGGGGCAGGGCAGCTATACCGAAGTGGCTTTGGTA
TTCGGCCACGATGATGAATCGCCGCTGGATACGCCCTTGTTTGAAAATCTGATTATTGAAATGTTGGTGCCGCTGCTGAT
TGCGGTTTCAACATCGAAAGAAGCATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)

RecC C-terminal domain (RecC_C)

(788-1004)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

67.17

98.605

0.662

Multiple sequence alignment