Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ACM67B_RS05815 Genome accession   NZ_CP181247
Coordinates   1216579..1220202 (+) Length   1207 a.a.
NCBI ID   WP_416188850.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1211579..1225202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS05795 (ACM67B_05795) - 1211796..1213424 (+) 1629 WP_416188846.1 ABC-F family ATPase -
  ACM67B_RS05800 (ACM67B_05800) - 1213520..1214185 (-) 666 WP_416188847.1 carbonic anhydrase -
  ACM67B_RS05805 (ACM67B_05805) - 1214344..1215432 (-) 1089 WP_416188848.1 metallophosphoesterase -
  ACM67B_RS05810 (ACM67B_05810) - 1215576..1216478 (+) 903 WP_416188849.1 Dyp-type peroxidase -
  ACM67B_RS05815 (ACM67B_05815) recB 1216579..1220202 (+) 3624 WP_416188850.1 exodeoxyribonuclease V subunit beta Machinery gene
  ACM67B_RS05820 (ACM67B_05820) - 1220315..1220536 (-) 222 WP_416188851.1 YdcH family protein -
  ACM67B_RS05825 (ACM67B_05825) - 1220777..1221520 (+) 744 WP_416188852.1 nitroreductase family protein -
  ACM67B_RS05830 (ACM67B_05830) glyA 1221696..1222946 (+) 1251 WP_416188853.1 serine hydroxymethyltransferase -
  ACM67B_RS05835 (ACM67B_05835) - 1223182..1223874 (-) 693 WP_416190527.1 SIR2 family NAD-dependent protein deacylase -

Sequence

Protein


Download         Length: 1207 a.a.        Molecular weight: 136335.39 Da        Isoelectric Point: 5.0161

>NTDB_id=1099574 ACM67B_RS05815 WP_416188850.1 1216579..1220202(+) (recB) [Neisseria sp. CCUG17229]
MSHSVHAFAPLSIPIQGTNLIEASAGTGKTYGIAALFTRLIVLEKMPVDKVLVVTFTKAATAELKTRLRARLDEVLQALE
SVANAAEDSDGLNQYCEREYPGDVFLKGLLQQALAQESQARLIVRLKAAIGDFDNASIYTIHGFCQRVLRDFAFLCQTQF
DVELADDSRERLLVPAQDFWRERVSNHPQLAKLVFKHQYTPQKMLFEIQSFTSRPYLRFRRPENLLAESQQNVAQTWANV
KTNLPKLKESFWRIHPNLNGNSYRTNTFQELFKQLTHAAEQDYLPKNHDKLPMFGADVLAEKAKKGQSLDAAALADLQML
ANLGRDLHQAAAEEENALTLLKLDLLDHINQALAEQKKSRRERTFDDLLLDVFNALQPTNPHAQALAQAVAATWQVALID
EFQDTDPLQYQIFSEIFIRQNKPLFLVGDPKQAIYSFRGADIYAYLQAAEDAQQHYTLATNFRSHAKLINGIGALFQCKN
RPFVLENIDYNPVGAAREESRLSPSRPVVQVRWLHGNETEPLNKDVLRKRAAEYCADEIAFALNEAAEGRLNFRERPLES
GDIAVLVRTHNEGSMIAQALKSRRIQSVLLHRESVFASPEAQGLAALLDFWLNPRRTESLRFALSGVLFGYDADALYALN
QSEADLLTWIDSAERAAQLWQQKGIYTAMQHFSAEHGIETRLLSDGNGRSLTNYHQLLERLSEENEQSHSPASLHQWLLA
QINLAENGNKSDNNVLRLESDEALVKIVTMHAAKGLQYPLVYCPFVWDAQDNKAHDWQILHRDDGESELLAEHQLDDDDH
VQLADEEMAERLRLLYVALTRAEEQLNIYAAYCQDTDDNTFAYLLEGHADSTREAVKAAYEGERKAGKGAAEMAMLKNNW
TKFINGQAANENTDFVFTEDTPLSAAYHSGQQADVAYQAAHIPPRGFEYIRHTSFTGLSRHVKAHDGEREELQPSLDAAE
SNIRPSENVVQENDHDKLSIHHFPRGTNAGLCLHDMLENLDFQSPAAEQSEQILETLTRYSFEEKWLPAVMTMLDCCRET
PISGKDTLSDIQPSERLPEMGFTLYMQDFNLAALRTWFAQPHLGLPPECIEAAQRLDFQDVQGYLNGFIDMTCIASDGQV
CVIDYKSNYLGANAAAYTPQAMNEAMGEHHYYLQALIYAIAVGRYFKLRGLALPQIAVRYLFLRGMNGTENGIWSWDIDA
EDLADWV

Nucleotide


Download         Length: 3624 bp        

>NTDB_id=1099574 ACM67B_RS05815 WP_416188850.1 1216579..1220202(+) (recB) [Neisseria sp. CCUG17229]
ATGTCCCATTCCGTTCATGCTTTTGCGCCGCTGTCGATTCCGATTCAAGGCACCAACCTGATTGAAGCCTCCGCCGGCAC
CGGTAAAACTTACGGCATCGCCGCGCTGTTTACCCGCCTGATTGTGTTGGAAAAAATGCCGGTAGATAAGGTTTTGGTCG
TTACCTTCACCAAAGCTGCTACTGCCGAACTCAAAACCCGCTTGCGCGCGCGTTTGGACGAAGTGTTGCAAGCTTTGGAA
AGCGTGGCAAACGCCGCCGAAGATTCAGACGGCCTCAATCAATATTGCGAACGCGAATACCCCGGCGACGTGTTTCTCAA
AGGCTTGCTGCAGCAGGCATTAGCGCAAGAAAGCCAAGCGCGCTTAATCGTGCGCCTGAAAGCGGCCATTGGAGATTTCG
ACAACGCTTCAATTTACACCATCCACGGCTTCTGCCAGCGCGTGCTGCGCGATTTCGCCTTTTTGTGCCAAACGCAATTT
GATGTCGAACTCGCCGACGACAGCCGCGAACGTTTGCTGGTGCCGGCGCAGGATTTTTGGCGTGAACGCGTGAGTAACCA
TCCGCAATTGGCCAAGCTGGTTTTCAAGCATCAATACACGCCGCAAAAAATGCTGTTCGAGATTCAAAGCTTTACCAGCC
GCCCGTATTTGCGTTTCAGACGGCCTGAAAATCTTCTGGCCGAATCGCAACAAAACGTTGCGCAAACATGGGCAAACGTC
AAAACCAATCTGCCTAAATTAAAAGAAAGCTTTTGGCGCATTCACCCTAATCTCAACGGCAACAGCTACCGCACCAACAC
TTTCCAAGAATTGTTCAAACAGCTCACACACGCCGCCGAACAAGATTACTTGCCGAAAAATCACGACAAATTGCCGATGT
TTGGCGCAGATGTGCTGGCCGAAAAAGCCAAAAAAGGCCAAAGCCTTGATGCCGCCGCTTTGGCCGATTTGCAGATGCTC
GCTAATCTCGGCCGCGATTTGCACCAAGCCGCCGCAGAAGAAGAAAACGCCCTCACCCTGCTCAAGCTCGACCTGCTCGA
CCACATCAACCAAGCCTTAGCCGAACAGAAAAAATCCCGCCGCGAGCGTACCTTTGACGATTTGCTGCTGGATGTGTTCA
ACGCATTACAACCGACTAATCCGCATGCCCAAGCCTTGGCCCAAGCCGTGGCAGCCACTTGGCAAGTGGCCTTGATTGAC
GAATTCCAAGACACCGACCCACTGCAATATCAGATTTTCAGCGAGATTTTTATCCGCCAAAACAAGCCTTTGTTTTTGGT
CGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCCGACATTTATGCCTATCTGCAAGCCGCAGAAGATGCGCAAC
AGCATTACACACTGGCGACCAATTTCCGCAGCCATGCCAAGCTGATTAACGGCATTGGTGCACTGTTTCAATGCAAAAAC
CGCCCGTTTGTATTGGAAAACATTGATTACAATCCGGTTGGCGCGGCGCGTGAAGAAAGCCGCTTGTCGCCGAGCCGCCC
TGTTGTTCAAGTGCGTTGGCTGCACGGCAATGAAACCGAGCCGCTAAACAAAGATGTCTTACGCAAACGAGCCGCCGAAT
ATTGCGCCGATGAAATCGCTTTTGCCTTAAACGAAGCAGCGGAAGGCCGTCTGAATTTCAGAGAGCGGCCGCTGGAATCG
GGCGACATTGCCGTGTTGGTACGCACCCACAACGAAGGCAGCATGATTGCCCAAGCCCTGAAATCACGCCGCATCCAAAG
CGTATTGCTGCACCGTGAATCCGTGTTCGCATCGCCCGAAGCACAAGGATTGGCGGCTTTATTGGATTTCTGGCTCAATC
CGCGCCGCACCGAATCGCTGCGTTTTGCCTTAAGCGGTGTACTGTTCGGCTACGATGCCGATGCACTTTACGCGCTCAAC
CAAAGCGAAGCCGACCTGTTGACGTGGATCGATTCGGCAGAGCGCGCCGCCCAGCTATGGCAGCAAAAAGGCATTTACAC
CGCCATGCAGCATTTTTCCGCCGAACACGGCATCGAAACCCGCCTGCTTTCAGACGGCAACGGCCGCAGCCTGACCAATT
ATCATCAACTGCTGGAACGCTTATCCGAAGAAAACGAGCAAAGCCACAGCCCCGCATCGCTGCATCAATGGCTGCTGGCA
CAAATCAATCTGGCCGAAAACGGCAACAAAAGCGACAACAATGTCTTACGCTTGGAAAGCGACGAAGCCTTAGTCAAAAT
CGTCACCATGCACGCAGCCAAAGGCTTGCAATATCCGCTGGTGTATTGCCCGTTTGTGTGGGACGCGCAAGACAATAAAG
CGCACGATTGGCAGATTCTGCACCGCGATGACGGCGAAAGCGAATTGCTGGCCGAACATCAGCTTGATGATGACGACCAC
GTCCAATTGGCCGATGAAGAAATGGCCGAACGTCTGCGCCTGCTCTATGTTGCCCTCACTCGCGCCGAAGAACAATTGAA
TATCTATGCCGCCTATTGCCAAGATACTGACGATAACACTTTCGCCTACCTGCTCGAAGGCCATGCCGACAGCACGCGTG
AAGCCGTGAAAGCTGCTTATGAGGGCGAGCGCAAAGCCGGAAAAGGCGCAGCAGAAATGGCCATGCTGAAAAACAATTGG
ACAAAATTCATCAACGGGCAAGCCGCAAACGAAAATACCGACTTTGTATTCACGGAAGATACACCTCTCTCCGCCGCTTA
TCATTCCGGCCAACAAGCCGATGTCGCGTATCAAGCTGCCCATATTCCGCCGCGCGGATTTGAATACATCCGCCACACCA
GCTTTACCGGCTTGAGCCGTCACGTCAAAGCGCACGACGGCGAACGTGAAGAATTGCAACCGAGTTTGGATGCCGCAGAA
AGCAACATCAGGCCGTCTGAAAACGTGGTTCAAGAAAACGACCATGACAAATTGAGCATTCACCATTTCCCGCGCGGCAC
CAATGCGGGCTTGTGTTTGCACGATATGCTGGAGAACCTTGATTTCCAAAGCCCTGCTGCCGAACAAAGTGAGCAAATTC
TGGAAACCTTAACCCGCTACAGCTTTGAAGAAAAATGGCTGCCCGCTGTGATGACCATGTTGGATTGTTGCCGCGAAACG
CCAATCTCAGGCAAAGATACTTTGTCAGACATTCAACCGAGCGAGCGTTTACCCGAAATGGGCTTCACCCTGTATATGCA
GGATTTCAATCTTGCCGCATTACGCACATGGTTTGCCCAGCCGCATTTGGGCTTGCCGCCGGAATGCATCGAAGCGGCGC
AACGGCTGGATTTTCAAGATGTACAAGGCTATCTCAACGGCTTTATCGACATGACCTGCATCGCTTCAGACGGCCAAGTT
TGCGTGATTGACTACAAATCCAATTACTTGGGCGCCAATGCAGCAGCTTATACCCCGCAAGCCATGAATGAAGCCATGGG
CGAACATCATTACTACCTGCAAGCCCTGATTTACGCCATTGCCGTCGGCCGCTATTTCAAACTGCGCGGCCTTGCTTTGC
CACAAATTGCCGTGCGCTATCTGTTTTTACGCGGCATGAACGGCACGGAAAACGGCATTTGGTCGTGGGATATTGATGCA
GAAGATTTGGCAGATTGGGTGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(456-829)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-452)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(990-1185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.758

100

0.611

Multiple sequence alignment