Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACM67C_RS11580 Genome accession   NZ_CP181246
Coordinates   2444290..2444757 (+) Length   155 a.a.
NCBI ID   WP_066081499.1    Uniprot ID   A0A378UKJ7
Organism   Bergeriella denitrificans strain DSM 17675     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439290..2449757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67C_RS11575 (ACM67C_11575) - 2439847..2444046 (+) 4200 WP_066077794.1 translocation/assembly module TamB domain-containing protein -
  ACM67C_RS11580 (ACM67C_11580) recX 2444290..2444757 (+) 468 WP_066081499.1 recombination regulator RecX Regulator
  ACM67C_RS11585 (ACM67C_11585) rsgA 2445550..2446416 (-) 867 WP_066081152.1 ribosome small subunit-dependent GTPase A -
  ACM67C_RS11590 (ACM67C_11590) - 2446677..2447372 (-) 696 WP_066081155.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACM67C_RS11595 (ACM67C_11595) pilT 2447646..2448686 (+) 1041 WP_066080992.1 type IV pilus twitching motility protein PilT Machinery gene

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 18037.30 Da        Isoelectric Point: 9.8934

>NTDB_id=1099554 ACM67C_RS11580 WP_066081499.1 2444290..2444757(+) (recX) [Bergeriella denitrificans strain DSM 17675]
MSKPPKSLRARAMDILSRREISRAGLKRKLAPHAESEEELDAVLAEFSERNWQSDERYAEAYIHSKSRLHGSRRLKQALS
AQGIDEALSRHFLPDRQSEQQTAAAILRKKFKHPPADLKEKQKQARFLAYRGFDMDAIQTAFKHAWDEDWTYESE

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1099554 ACM67C_RS11580 WP_066081499.1 2444290..2444757(+) (recX) [Bergeriella denitrificans strain DSM 17675]
ATGAGCAAACCGCCCAAATCCCTGCGCGCCCGCGCCATGGACATCCTGTCGCGCCGGGAAATCAGCCGCGCCGGGCTTAA
ACGCAAGCTCGCGCCCCATGCCGAAAGCGAAGAAGAGCTGGACGCGGTATTGGCCGAATTCAGCGAACGCAACTGGCAGT
CGGACGAACGCTACGCCGAAGCCTATATCCACAGCAAAAGCCGCCTGCACGGATCGCGGCGGCTGAAACAGGCACTGTCG
GCGCAGGGCATAGACGAAGCCCTCAGCCGCCACTTCCTGCCCGACCGCCAAAGCGAGCAGCAAACCGCCGCCGCCATCTT
GCGTAAAAAATTCAAACACCCCCCCGCCGATTTGAAGGAAAAACAGAAACAAGCCCGCTTCCTAGCCTACCGCGGCTTCG
ATATGGACGCCATCCAAACCGCCTTCAAACACGCCTGGGACGAAGATTGGACATACGAAAGCGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378UKJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

79.73

95.484

0.761

Multiple sequence alignment