Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACM67C_RS09395 Genome accession   NZ_CP181246
Coordinates   1996210..1999452 (-) Length   1080 a.a.
NCBI ID   WP_066077755.1    Uniprot ID   -
Organism   Bergeriella denitrificans strain DSM 17675     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1991210..2004452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67C_RS09375 (ACM67C_09375) - 1992536..1994059 (+) 1524 WP_066077742.1 Na+/H+ antiporter NhaC family protein -
  ACM67C_RS09380 (ACM67C_09380) nagZ 1994111..1995196 (+) 1086 WP_066077744.1 beta-N-acetylhexosaminidase -
  ACM67C_RS09385 (ACM67C_09385) - 1995356..1995751 (+) 396 WP_066077746.1 c-type cytochrome -
  ACM67C_RS09395 (ACM67C_09395) recC 1996210..1999452 (-) 3243 WP_066077755.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACM67C_RS09400 (ACM67C_09400) - 1999642..2001078 (+) 1437 WP_066077749.1 PepSY-associated TM helix domain-containing protein -
  ACM67C_RS09405 (ACM67C_09405) ubiD 2001377..2002855 (+) 1479 WP_115225432.1 4-hydroxy-3-polyprenylbenzoate decarboxylase -
  ACM67C_RS09410 (ACM67C_09410) - 2003425..2003943 (-) 519 WP_115225434.1 PqiC family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 121228.18 Da        Isoelectric Point: 4.7737

>NTDB_id=1099551 ACM67C_RS09395 WP_066077755.1 1996210..1999452(-) (recC) [Bergeriella denitrificans strain DSM 17675]
MSEAKFYLYQSNRLETLAALFCKIQQVRPLSHPLAAEEVIVQSQGMRRYLNGFLAKENGVAANLRFSLPAGLTWRLMREF
IPGVPALSPFNPEVMRWRLLDLFRSDAFQSGGDGGLTLSRAALQGYLGSGESADYQLAGQLADMFDQYLVYRPQWIAAWQ
AGRLLDLGEDEGWQAELWRFLDDGRQSSPHRVALWTQLLDALSAERLPERFFVFGISTMAPMYLQLLQKLAEHCEVFVFA
LNPSEQYWGNVVEAAQILKSGGEPDLSQSGHPLLASLGKQGRDFFDFLSEIELETQVFEQPETRAPESLLHRLQYDIQTL
NMPSENEATATALQDGSIRIVSAHSPLRELQILKDQILQMLHEHPDWQPHDIAVLTPDITPYSPFIEAVFGRAQAGGQAL
PYSLSDVKLSRRQPLLHTLEQVLDLLESRFEVDKVLPLLESGPVQARFGLTADDVPLLHDTVASLNIHWGLDAQMRGAAD
NLFTWQQAADRLVLGWMLPEGGSGVWQSVSAWHADVNQIEVFSRFAAFIRTLADIAAQWQEAAEIPVWAERVRGLMQTLL
LPSENDQHALQQFEQALAKWQEEAELAGFDGLLNLHTATRHLRRFLNSESQAGFLQGGITFCSMVPMRSLPFKVLCLLGL
NDGDFPRNTKAAAFDLIARHPQKGDRARRDDDRYLFLEALISAREVLYLSYTGRSIRNDDELAPSALVSELIDTVAAMTG
QRSKTLSEEWVIQHPLQAFSTRYFLPQAQSDALVSTRSDYAQALNSPERAAVPFFSEPLNAADMPSENPSLSQAEFIGFW
RNPVRHWLQHTLAWKAPYRDEAWEAAEPFEPEEGAQIADAYLEARRSRRDFDGVAAKLSAESLLPAGELGALWQQQFQTA
AKRIEQALLDSPKHPPYTYELVLAGYRLSGSLTRLYQAGQIVFQNRTPTAPDSIALLLEHLIYCAAGPSENGALPTYIVE
NGHTEVYPPLPQQQARDWLAAWLEYYRIGQSRPLPFFAKTSLAAAEEYLKKQDWEAAKTAAFKAYNGNKMSKGQRSYTEV
ALVFGQDETLPTDTPLFENMVVDLLVPLLSAVRQTEQTAE

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=1099551 ACM67C_RS09395 WP_066077755.1 1996210..1999452(-) (recC) [Bergeriella denitrificans strain DSM 17675]
ATGTCTGAAGCCAAATTTTATCTGTATCAGTCCAACCGCCTGGAAACGCTGGCGGCGCTGTTTTGCAAAATCCAGCAGGT
ACGCCCGCTGTCGCATCCTTTGGCGGCGGAGGAAGTGATTGTGCAGAGCCAGGGCATGCGCCGCTATCTGAACGGCTTTC
TGGCTAAGGAAAACGGCGTGGCGGCCAATCTGCGTTTCAGCCTGCCTGCAGGGCTGACCTGGCGGCTGATGCGCGAATTT
ATCCCCGGCGTGCCCGCGCTCAGCCCGTTTAATCCTGAAGTGATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGATGC
CTTCCAAAGCGGCGGGGACGGCGGATTAACACTCAGCCGCGCCGCGCTGCAAGGCTATTTGGGCAGTGGCGAATCGGCGG
ATTACCAGCTGGCGGGGCAGCTGGCGGATATGTTCGACCAATATCTGGTGTACCGCCCGCAATGGATTGCCGCGTGGCAG
GCGGGCAGGCTGCTGGATTTGGGCGAAGACGAGGGCTGGCAGGCGGAGCTGTGGCGCTTTTTGGACGACGGCCGCCAATC
TTCGCCGCACCGCGTGGCGCTGTGGACGCAGCTGCTGGACGCGCTGTCGGCAGAGCGTCTGCCCGAGCGTTTTTTCGTAT
TCGGCATTTCCACCATGGCGCCGATGTATCTGCAGCTGCTGCAAAAGCTGGCCGAGCATTGCGAAGTGTTTGTGTTTGCA
CTCAATCCTAGCGAGCAGTATTGGGGCAATGTGGTTGAAGCGGCGCAAATTCTCAAAAGCGGCGGCGAGCCGGATTTGAG
CCAGAGCGGTCATCCGCTTTTGGCTTCTCTGGGCAAACAGGGGCGCGACTTTTTTGACTTTTTGTCGGAAATCGAGCTGG
AAACGCAGGTGTTCGAGCAGCCCGAAACACGCGCGCCCGAAAGCCTGCTGCACCGCCTGCAATACGATATCCAAACGCTG
AATATGCCGTCTGAAAACGAAGCCACCGCCACCGCGCTGCAAGACGGCTCGATACGCATCGTGTCGGCGCACAGCCCCTT
GCGCGAGTTGCAGATTTTAAAAGACCAAATCCTGCAGATGCTGCACGAACATCCCGATTGGCAGCCGCACGACATTGCCG
TACTCACCCCCGACATCACGCCTTACAGCCCGTTTATCGAAGCCGTATTCGGCCGCGCGCAGGCGGGCGGGCAGGCGCTG
CCGTATTCCCTTTCCGATGTGAAACTCAGCCGCCGTCAGCCGCTGCTGCATACGCTGGAGCAGGTGTTGGACTTGCTGGA
AAGCCGTTTTGAAGTGGATAAAGTCCTGCCGCTGCTGGAAAGCGGCCCGGTGCAGGCACGCTTCGGCCTGACGGCGGACG
ATGTGCCGCTGCTGCACGATACCGTGGCCTCGCTCAATATCCATTGGGGTTTGGACGCGCAGATGCGCGGCGCGGCCGAT
AATCTGTTTACCTGGCAGCAGGCGGCCGACCGGCTGGTGTTGGGCTGGATGCTGCCCGAGGGCGGCAGCGGCGTGTGGCA
GTCGGTCAGCGCGTGGCATGCCGATGTCAACCAAATCGAGGTATTCAGCCGCTTTGCCGCCTTTATCCGCACGCTGGCCG
ACATTGCCGCGCAATGGCAGGAAGCTGCCGAAATTCCGGTATGGGCGGAGCGGGTGCGCGGGCTGATGCAGACGCTGCTG
CTGCCGTCTGAAAACGACCAGCACGCCTTGCAGCAGTTTGAGCAGGCGCTGGCCAAATGGCAGGAAGAAGCGGAATTGGC
CGGATTTGACGGGCTGCTGAACCTGCATACCGCCACCCGCCATCTGCGCCGCTTTTTAAACAGCGAAAGCCAGGCCGGTT
TCCTGCAGGGCGGCATCACCTTCTGCAGCATGGTGCCCATGCGCAGCCTGCCTTTCAAAGTATTGTGCCTGCTGGGGCTG
AACGACGGCGATTTCCCGCGCAACACCAAAGCGGCCGCTTTCGACCTGATTGCCCGACACCCGCAAAAAGGCGACCGCGC
CCGCCGCGACGACGACCGCTATCTGTTTCTCGAAGCCTTAATCAGCGCCCGCGAAGTATTGTATCTGTCCTATACCGGCC
GCAGCATCCGCAACGATGACGAACTGGCACCCTCCGCCCTGGTCAGCGAGCTGATTGATACCGTGGCCGCCATGACCGGA
CAGCGCAGCAAAACCCTGTCGGAAGAATGGGTGATCCAACATCCGCTGCAAGCCTTTTCCACACGCTATTTCCTGCCGCA
GGCGCAGAGCGACGCGCTGGTCAGCACGCGTTCGGATTACGCGCAGGCGCTCAACAGCCCCGAGCGTGCCGCCGTACCGT
TTTTCAGCGAACCCTTGAACGCGGCAGATATGCCGTCTGAAAACCCAAGCTTGTCGCAGGCCGAGTTCATCGGCTTTTGG
CGCAATCCCGTCCGCCACTGGCTGCAGCACACACTGGCGTGGAAAGCCCCGTACCGCGACGAAGCCTGGGAAGCCGCCGA
GCCTTTCGAGCCGGAAGAGGGCGCGCAGATTGCCGATGCCTATCTGGAAGCCCGCCGCAGCCGCCGCGATTTCGACGGCG
TGGCCGCCAAACTCTCCGCCGAAAGCCTGCTGCCCGCCGGTGAATTGGGCGCACTGTGGCAGCAGCAGTTTCAGACGGCC
GCCAAGCGCATCGAACAGGCGTTGCTCGACAGCCCCAAACACCCGCCCTATACCTATGAGCTGGTGCTGGCAGGCTACCG
CCTCTCCGGCAGCCTTACGCGCCTTTACCAAGCCGGGCAAATCGTGTTCCAAAACCGCACGCCGACCGCGCCCGACAGCA
TCGCGCTGCTGCTGGAACATCTGATTTACTGCGCCGCCGGGCCGTCTGAAAACGGCGCATTGCCGACTTATATCGTGGAA
AACGGCCATACCGAAGTCTATCCGCCCCTGCCGCAGCAGCAGGCGCGTGATTGGCTGGCGGCATGGCTGGAATATTACCG
CATCGGCCAAAGCCGCCCGCTGCCGTTTTTCGCCAAAACCAGCCTGGCCGCCGCGGAAGAATATCTGAAAAAACAGGATT
GGGAAGCTGCCAAAACCGCCGCGTTCAAAGCCTACAACGGCAACAAAATGAGCAAAGGGCAGCGCAGCTACACCGAAGTC
GCCCTGGTATTCGGGCAGGACGAAACCCTGCCGACCGATACGCCGCTGTTTGAAAACATGGTCGTCGATTTGCTGGTGCC
GCTGCTGAGCGCGGTGCGGCAAACGGAGCAAACGGCGGAGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(790-1007)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(6-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

65.056

99.63

0.648

Multiple sequence alignment