Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACM67C_RS08270 Genome accession   NZ_CP181246
Coordinates   1738232..1739035 (+) Length   267 a.a.
NCBI ID   WP_066078941.1    Uniprot ID   -
Organism   Bergeriella denitrificans strain DSM 17675     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1733232..1744035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67C_RS08245 (ACM67C_08245) hfq 1733403..1733693 (-) 291 WP_066079319.1 RNA chaperone Hfq -
  ACM67C_RS08250 (ACM67C_08250) - 1734058..1734603 (-) 546 WP_066078929.1 hypothetical protein -
  ACM67C_RS08255 (ACM67C_08255) - 1734603..1735004 (-) 402 WP_066078932.1 DUF4124 domain-containing protein -
  ACM67C_RS08260 (ACM67C_08260) - 1735050..1736969 (-) 1920 WP_066078933.1 ATP-binding cassette domain-containing protein -
  ACM67C_RS08265 (ACM67C_08265) rluD 1737112..1738233 (-) 1122 WP_066078936.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACM67C_RS08270 (ACM67C_08270) comL 1738232..1739035 (+) 804 WP_066078941.1 outer membrane protein assembly factor BamD Machinery gene
  ACM67C_RS08275 (ACM67C_08275) tmk 1739164..1739793 (+) 630 WP_066078944.1 dTMP kinase -
  ACM67C_RS08280 (ACM67C_08280) - 1740124..1740600 (+) 477 WP_066078950.1 hypothetical protein -
  ACM67C_RS08285 (ACM67C_08285) - 1740828..1741523 (+) 696 WP_066078959.1 pseudouridine synthase -
  ACM67C_RS08290 (ACM67C_08290) - 1742139..1743236 (-) 1098 WP_416178179.1 SHOCT domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31122.01 Da        Isoelectric Point: 8.5135

>NTDB_id=1099548 ACM67C_RS08270 WP_066078941.1 1738232..1739035(+) (comL) [Bergeriella denitrificans strain DSM 17675]
MKKILLVVSLSLALGACANTGTIDKDAQITQDWSVQQLYAEAQDELNSNNYTRAIKLYELLESRFPYGRYAQQSQLDTAY
AYYKDDEPAKALAAIERFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFSQLIQRYPNS
KYAPDATERMTKLVDALGGNEMAVARYYMKRGAYVAAANRAQKIVERYQNTRYVEESLAMLEQAYNKLDKPQLAADTRRI
LEQNFPQSPYLTKGWRNDDIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1099548 ACM67C_RS08270 WP_066078941.1 1738232..1739035(+) (comL) [Bergeriella denitrificans strain DSM 17675]
ATGAAAAAAATTCTTTTAGTCGTTTCGTTAAGTTTGGCACTCGGTGCATGCGCCAATACCGGCACAATCGATAAAGACGC
GCAGATTACCCAGGATTGGAGCGTGCAGCAGCTCTATGCGGAAGCGCAAGACGAGTTGAACAGCAATAATTATACGCGAG
CTATCAAGTTATATGAACTTTTAGAATCACGCTTCCCCTACGGCCGCTACGCCCAGCAGTCGCAGCTGGATACGGCCTAC
GCCTACTATAAAGACGACGAGCCGGCCAAAGCGCTGGCTGCTATTGAGCGTTTCCAGCGCCACCACCCGCAGCATCCGAA
TATGGACTACGCGCTGTATCTCAAAGGCCTGGTATTGTTTAACGAAGACCAGTCTTTCTTAAACAAACTGGCGTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCATACCACGCCTTTTCGCAACTGATTCAGCGCTACCCCAACAGC
AAATACGCGCCCGACGCCACCGAGCGCATGACCAAGCTGGTGGACGCTTTGGGCGGCAATGAAATGGCCGTTGCCCGCTA
CTACATGAAACGCGGCGCTTACGTTGCCGCCGCCAACCGCGCGCAGAAAATCGTCGAGCGTTACCAAAACACCCGCTACG
TCGAAGAATCGCTGGCCATGCTCGAGCAGGCTTACAACAAACTCGACAAGCCGCAGCTGGCCGCCGACACCCGCCGCATT
CTGGAGCAAAACTTCCCGCAAAGCCCCTATCTCACCAAAGGCTGGCGCAACGACGACATCCCGTGGTGGCGTTATTGGAA
ATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

82.331

99.625

0.82
  comL Neisseria gonorrhoeae MS11

82.331

99.625

0.82

Multiple sequence alignment