Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ACM67C_RS06685 Genome accession   NZ_CP181246
Coordinates   1383480..1385228 (-) Length   582 a.a.
NCBI ID   WP_066079456.1    Uniprot ID   A0A378UFV0
Organism   Bergeriella denitrificans strain DSM 17675     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1378480..1390228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67C_RS06665 (ACM67C_06665) tilS 1378822..1380150 (-) 1329 WP_115225403.1 tRNA lysidine(34) synthetase TilS -
  ACM67C_RS06670 (ACM67C_06670) - 1380241..1381200 (-) 960 WP_066079465.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  ACM67C_RS06675 (ACM67C_06675) - 1381376..1381780 (+) 405 WP_066079462.1 RNA-binding S4 domain-containing protein -
  ACM67C_RS06680 (ACM67C_06680) - 1381998..1383182 (-) 1185 WP_066079459.1 hypothetical protein -
  ACM67C_RS06685 (ACM67C_06685) recD 1383480..1385228 (-) 1749 WP_066079456.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ACM67C_RS06690 (ACM67C_06690) lolD 1386082..1386762 (-) 681 WP_066077561.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACM67C_RS06695 (ACM67C_06695) - 1386755..1388005 (-) 1251 WP_066077563.1 lipoprotein-releasing ABC transporter permease subunit -
  ACM67C_RS06700 (ACM67C_06700) - 1388224..1388511 (+) 288 WP_066077565.1 hypothetical protein -
  ACM67C_RS06705 (ACM67C_06705) - 1388807..1389220 (-) 414 WP_066077568.1 YidB family protein -
  ACM67C_RS06710 (ACM67C_06710) ruvX 1389400..1389888 (-) 489 WP_066077570.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 62416.31 Da        Isoelectric Point: 6.6208

>NTDB_id=1099546 ACM67C_RS06685 WP_066079456.1 1383480..1385228(-) (recD) [Bergeriella denitrificans strain DSM 17675]
MTTDFPADAPQYAASAATAFISRFAPDEAELVAPYVAQLFAALQGGHTFIRLTREQADTLRQAVNIVGTGGDTPLVLTGQ
RLFLGRMWQLEQDLAKEIRRLAAAGVGAVNEAKAAAALADWFPGAGSEGQRDAAALALLQSFMLITGGPGTGKTTTVAKL
LGLICGNAETLPRIVLAAPTGKAAAHMAGALHRAAGSFGLSEDIRRHLTGLEGQTVHRLLKLRPPQMRPYYHADNPLPLD
VLIVDEASMLDLALLLQLLRAIPDGCRLILLGDPYQLPSVGVGAVLAALVQETVLDEATHAKLGAYLPQHAFPVSSDAAV
LAQNSARLSVSHRFGADSGIGCLARAVVSGQAQAAWAQFARFPDELSARTGTFREQAALLYRKHEAYWQAVDAGDAASAY
AHIADVAVLTAWRQDAEAFNRAYRTHLQKMGRCDADAPWFAGQIVMVVRNDYPLDLFNGDIGLIMPSEKHGGAPAAYFPT
RDGFKTVPVSRLPQNEPAFAITVHKSQGSEYREVWLLPPVLPEAAEDDAPQGLDNALLYTGITRARERFVFWGGEAELVR
AVQTQKKRATALYDMLKALPPA

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=1099546 ACM67C_RS06685 WP_066079456.1 1383480..1385228(-) (recD) [Bergeriella denitrificans strain DSM 17675]
ATGACTACTGATTTCCCTGCTGACGCGCCCCAATATGCCGCATCTGCCGCCACGGCGTTTATCTCACGTTTCGCGCCCGA
TGAGGCGGAGCTGGTTGCGCCTTATGTCGCCCAGCTTTTTGCCGCGCTGCAGGGCGGGCATACCTTTATCCGTCTGACGC
GGGAGCAGGCCGATACGTTGCGGCAGGCGGTCAATATCGTGGGTACGGGCGGCGATACGCCGTTGGTGTTGACGGGGCAG
CGGCTGTTTTTGGGGCGGATGTGGCAGCTTGAGCAGGATTTGGCTAAAGAAATCCGCCGTTTGGCTGCGGCAGGCGTGGG
CGCGGTAAACGAGGCGAAAGCCGCTGCCGCGCTGGCAGACTGGTTTCCCGGTGCGGGCAGCGAAGGGCAGCGCGATGCGG
CGGCTTTGGCGCTGCTGCAATCGTTTATGCTGATTACCGGCGGGCCGGGCACGGGTAAAACCACCACCGTAGCCAAGCTG
CTGGGGCTGATTTGCGGCAATGCCGAAACCTTACCGCGCATCGTTTTGGCCGCGCCCACGGGCAAGGCGGCCGCGCATAT
GGCCGGTGCGCTGCATCGGGCGGCCGGCAGCTTCGGGCTGAGCGAGGATATCCGCCGCCACTTGACGGGGCTGGAGGGGC
AGACCGTGCACCGCCTGCTGAAGCTGCGTCCGCCCCAAATGCGGCCGTATTACCATGCGGACAATCCCTTGCCGCTGGAT
GTGTTGATTGTTGATGAAGCGTCGATGCTGGATTTGGCCTTGCTGCTGCAACTGTTGCGCGCCATTCCCGACGGCTGCCG
TCTGATTTTGCTGGGCGACCCTTATCAGTTACCGTCCGTGGGTGTGGGCGCGGTATTGGCGGCTTTGGTGCAGGAAACGG
TATTGGACGAAGCCACTCATGCCAAGCTGGGTGCGTATCTGCCGCAGCACGCGTTTCCCGTCAGCAGCGATGCGGCGGTG
CTGGCGCAAAACAGCGCACGCCTGAGCGTCAGCCACCGCTTCGGCGCAGACAGCGGCATCGGCTGCCTGGCACGGGCGGT
GGTGTCGGGGCAGGCGCAGGCGGCTTGGGCGCAGTTTGCCCGTTTTCCCGACGAACTTTCTGCGCGCACCGGCACCTTCC
GCGAGCAGGCGGCGCTGCTTTACCGCAAGCACGAAGCATATTGGCAGGCGGTGGACGCGGGCGATGCGGCGTCGGCCTAC
GCGCATATTGCCGATGTGGCGGTGCTGACAGCCTGGCGGCAGGACGCGGAAGCCTTCAACCGCGCCTATCGGACGCATTT
GCAGAAAATGGGACGCTGCGATGCCGATGCGCCATGGTTTGCGGGGCAGATTGTGATGGTGGTACGCAACGATTATCCGC
TGGATTTGTTCAACGGCGATATCGGCCTGATTATGCCGTCTGAAAAACACGGGGGCGCACCTGCGGCGTATTTCCCGACC
CGCGACGGCTTTAAAACCGTGCCCGTCAGCCGCCTGCCGCAAAACGAGCCGGCTTTTGCCATCACGGTACACAAAAGCCA
GGGCTCGGAATACCGCGAAGTCTGGCTGTTGCCGCCGGTGTTGCCGGAAGCGGCGGAAGACGACGCGCCGCAGGGGCTGG
ATAACGCGCTGCTCTATACCGGCATTACCCGCGCCCGCGAGCGTTTTGTCTTTTGGGGGGGCGAGGCCGAGCTGGTACGC
GCGGTGCAGACGCAGAAAAAACGTGCCACCGCCTTATACGATATGCTGAAAGCGTTGCCGCCGGCTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(497-548)

AAA domain (AAA_30)

(127-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378UFV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

61.002

96.048

0.586

Multiple sequence alignment