Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ACM67C_RS06640 Genome accession   NZ_CP181246
Coordinates   1369926..1373525 (+) Length   1199 a.a.
NCBI ID   WP_066077893.1    Uniprot ID   -
Organism   Bergeriella denitrificans strain DSM 17675     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1364926..1378525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67C_RS06620 (ACM67C_06620) ispD 1365898..1366602 (-) 705 WP_066079913.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACM67C_RS06625 (ACM67C_06625) dnaQ 1366599..1367312 (-) 714 WP_066079916.1 DNA polymerase III subunit epsilon -
  ACM67C_RS06630 (ACM67C_06630) - 1367576..1369048 (+) 1473 WP_066077897.1 patatin-like phospholipase family protein -
  ACM67C_RS06635 (ACM67C_06635) - 1369131..1369853 (+) 723 WP_066077895.1 epoxyqueuosine reductase QueH -
  ACM67C_RS06640 (ACM67C_06640) recB 1369926..1373525 (+) 3600 WP_066077893.1 exodeoxyribonuclease V subunit beta Machinery gene
  ACM67C_RS06645 (ACM67C_06645) rbfA 1373706..1374077 (+) 372 WP_066077891.1 30S ribosome-binding factor RbfA -
  ACM67C_RS06650 (ACM67C_06650) - 1374295..1375368 (+) 1074 WP_066077889.1 calcium:proton antiporter -
  ACM67C_RS06655 (ACM67C_06655) truB 1375588..1376496 (+) 909 WP_066077887.1 tRNA pseudouridine(55) synthase TruB -

Sequence

Protein


Download         Length: 1199 a.a.        Molecular weight: 132643.12 Da        Isoelectric Point: 5.6056

>NTDB_id=1099545 ACM67C_RS06640 WP_066077893.1 1369926..1373525(+) (recB) [Bergeriella denitrificans strain DSM 17675]
MTATARPFDPLTVPVSGTNLIEASAGTGKTYGIAALFTRLIVLEQMPVESVLVVTFTKAATAELKTRLRARLDNVLQVLE
QSGGDPEAAEACCAREYPGDAFLPELLRQSLAQEGCARLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCRAPFDVE
LAEESRERLLVPAQDFWRSRISNQADLARLVFKHSQTPQKMLGQIQSFISRPYLVFRRPKADLAGSRRRAEARWQAVRSR
LPELEAAFWQLHPALNGNSYRKNTFAALFAELHAAGDALPAYHDKLPMLAADALAAKVKKGQTPDEHTIAALQPLADLGE
ALAAAAEAEQNTLTCLQLDLLEYVNAALAEQKKSRRERGFDDLLLDVHAALTDAQYGGALAEAVARNWRVALIDEFQDTD
PLQYEIFRRMFIEQARPLFLVGDPKQAIYSFRGADIYAYLQAAADAESRYTLAVNYRSHAKLVNSIGALFRQKTRPFVLA
DIDYADVGAARPASRLNPPRPAVQVRWLHGGSGEPVNKDMLRQHAADCCADEIAAALNEAAASRLNFKERPLQSGDIAVL
VRTHNEGSLVAKALKARRIQSVLLHRESVFATEEAAALAALIGFWLDPGQTETLRFVLGSIVFRYDAAQLYALNRDESAL
LAWIASAAEAADTWQQQGFYAAMQDFSARHGLETGLLADGLERSLTNYNQLLELLAAEDEQSHSPAALHQWLLAQISLAE
GGSAGGESNTVRLESDEALVKIVTMHASKGLQYPLVYCPFVWDASAIKAQEWQILHRPGHITELLADHQLDDADKIQLGD
EAAAENLRLLYVALTRAEEQLNIYAAYCGDTADNTFAYLLEGRADADRESVKAAYKENKAPEALQMLKRNWLRFIQAQQQ
ADTEIVFTEETPPKALADNTRHIQTAYRAADIPPRRFELIRHSSFTGLSRKLKAEDTAHEALQPALDPGESASDAPLPPA
AAANAPSTPEGIHTFPRGTHAGVCLHEILEHFDFQTPAAAQNQAAAETLSRYGFEESWLDAVTDTLDDCRLTPLSGAYAL
ADIPPRNRLAEMGFTLYMQDFSLPRLRRWFARPEHGLPAECADAAELLDFKTLHGFLNGFIDMVCQDADGRVCVIDYKSN
HLGNDRSAYSVDAMNHAVAHHHYYLQALIYAVAVARHFKLRGQSLPEISIRYLFLRGLDGSENGVWRWDIPADALAEWV

Nucleotide


Download         Length: 3600 bp        

>NTDB_id=1099545 ACM67C_RS06640 WP_066077893.1 1369926..1373525(+) (recB) [Bergeriella denitrificans strain DSM 17675]
ATGACCGCCACCGCCCGCCCGTTCGATCCCCTGACCGTACCCGTATCCGGCACCAACCTTATCGAAGCCTCCGCCGGTAC
GGGCAAAACCTACGGCATCGCCGCCCTGTTTACCCGCCTGATTGTTTTGGAACAGATGCCGGTAGAAAGCGTGCTGGTCG
TTACCTTTACCAAAGCCGCCACCGCCGAGCTGAAAACCCGCCTGCGCGCGCGGCTCGACAATGTATTACAGGTTTTGGAA
CAGAGCGGCGGCGACCCGGAAGCAGCCGAAGCCTGCTGCGCGCGCGAATATCCCGGCGATGCCTTTCTGCCCGAGCTGCT
GCGTCAGTCGCTGGCGCAGGAAGGCTGTGCGCGGCTGATTGTGCGCTTGAAAGCCGCCATCGGCCAGTTCGACAACGCCG
CGATTTACACCATACACGGCTTCTGCCAGCGCATCCTGCGCGATTACGCCTTTCTCTGCCGCGCGCCTTTCGATGTAGAA
CTGGCCGAAGAAAGCCGCGAGCGCCTGCTGGTGCCCGCGCAGGATTTCTGGCGCAGCCGCATCAGCAATCAGGCCGACTT
GGCGCGTTTGGTCTTCAAACACAGCCAAACCCCGCAGAAAATGCTGGGGCAAATCCAAAGTTTCATTAGCCGCCCGTATC
TGGTTTTCAGACGGCCTAAAGCCGATTTGGCCGGCTCACGGCGGCGCGCCGAAGCCCGCTGGCAGGCCGTCCGCAGCCGC
CTGCCCGAATTGGAAGCCGCATTCTGGCAGCTCCACCCCGCGCTCAACGGCAACAGCTACCGCAAAAACACCTTTGCCGC
CCTGTTTGCCGAATTACACGCCGCCGGAGACGCACTGCCCGCCTACCACGACAAGCTGCCGATGCTGGCCGCCGACGCGC
TGGCCGCCAAAGTCAAAAAAGGCCAAACGCCCGACGAACATACCATCGCCGCCCTGCAGCCGCTGGCCGACTTGGGCGAA
GCGCTGGCCGCCGCCGCCGAAGCCGAACAAAATACCTTAACTTGCCTGCAGCTCGACCTGCTGGAATATGTCAACGCCGC
GCTGGCGGAGCAGAAAAAATCCCGCCGCGAGCGCGGTTTCGACGATTTGCTGCTGGACGTACACGCCGCGCTCACCGATG
CGCAATACGGCGGCGCACTGGCCGAAGCCGTCGCCCGCAACTGGCGCGTGGCGCTGATTGACGAGTTTCAAGACACCGAC
CCGCTGCAATATGAGATTTTCCGCCGGATGTTTATCGAGCAGGCGCGGCCGCTGTTTTTGGTGGGCGACCCCAAGCAGGC
GATTTACAGCTTTCGCGGCGCGGATATTTACGCCTATCTGCAGGCCGCCGCCGATGCCGAATCGCGCTACACGCTGGCGG
TCAACTACCGCAGCCACGCGAAGCTCGTCAACAGCATCGGCGCACTGTTCCGCCAAAAAACGCGGCCGTTTGTGCTGGCC
GACATCGACTATGCCGACGTGGGCGCGGCGCGTCCGGCAAGCCGTCTGAATCCACCGCGCCCTGCCGTACAGGTGCGCTG
GCTGCACGGCGGCAGCGGCGAGCCGGTGAACAAAGATATGCTGCGCCAGCACGCTGCCGACTGCTGCGCCGACGAAATCG
CCGCCGCCTTAAACGAAGCCGCCGCAAGCCGTCTGAATTTCAAAGAGCGGCCGCTGCAATCGGGCGACATCGCCGTATTG
GTCCGCACCCACAACGAAGGCAGCCTGGTCGCCAAAGCCCTGAAAGCGCGGCGCATCCAAAGCGTGCTGCTGCACCGCGA
ATCGGTGTTTGCCACGGAAGAAGCCGCCGCATTGGCCGCGCTGATCGGCTTCTGGCTCGACCCCGGGCAGACCGAAACGC
TGCGTTTTGTCCTCGGCAGCATTGTGTTCCGCTACGATGCCGCGCAGCTTTACGCGCTCAACCGCGACGAATCCGCCCTG
CTCGCCTGGATTGCCTCCGCCGCCGAAGCTGCCGATACTTGGCAGCAGCAGGGCTTTTACGCCGCCATGCAGGATTTTTC
CGCCCGCCACGGCTTGGAAACCGGCCTGCTCGCCGACGGCTTGGAGCGCAGCCTGACCAACTACAACCAGCTGCTGGAGC
TTTTGGCCGCCGAAGACGAGCAGAGCCACAGCCCCGCCGCGCTGCATCAATGGCTGCTGGCGCAAATCAGCCTGGCCGAA
GGCGGCAGCGCGGGCGGCGAAAGCAATACCGTGCGCCTGGAGAGCGATGAAGCGCTGGTGAAAATCGTCACCATGCACGC
ATCCAAAGGCCTGCAATATCCCTTGGTGTATTGTCCTTTTGTTTGGGACGCTTCCGCCATCAAAGCGCAAGAATGGCAGA
TTTTGCACCGCCCCGGCCACATCACCGAGCTTTTGGCCGACCACCAGCTCGATGATGCCGACAAAATTCAGCTGGGCGAT
GAAGCCGCCGCCGAAAACCTGCGCCTGCTGTATGTCGCCCTCACCCGCGCCGAGGAGCAGCTGAATATCTATGCCGCCTA
CTGCGGCGACACCGCCGACAACACGTTTGCCTATCTGTTGGAAGGCCGCGCCGATGCCGACCGCGAAAGCGTCAAGGCCG
CCTATAAAGAAAACAAAGCGCCGGAAGCCTTGCAGATGCTGAAACGCAACTGGCTGCGCTTTATCCAAGCGCAGCAGCAA
GCCGATACCGAAATCGTGTTCACCGAAGAGACACCGCCCAAAGCGTTGGCCGACAACACGCGGCATATTCAGACGGCCTA
CCGCGCCGCCGACATTCCGCCGCGCCGCTTCGAGCTGATCCGCCACAGCAGCTTTACCGGTCTCAGCCGCAAGCTGAAAG
CCGAAGACACGGCACACGAAGCCCTGCAGCCCGCGCTCGACCCCGGCGAAAGTGCATCGGATGCGCCGCTGCCGCCTGCC
GCAGCCGCCAACGCGCCCTCAACGCCCGAGGGCATTCACACTTTTCCGCGCGGCACCCACGCCGGCGTGTGTCTGCACGA
AATTTTGGAGCATTTCGATTTCCAAACGCCCGCCGCCGCGCAAAACCAAGCCGCCGCCGAAACCTTGAGCCGCTACGGTT
TTGAGGAAAGTTGGCTGGATGCGGTAACGGATACGCTGGATGACTGCCGCCTCACGCCGCTCTCCGGCGCTTATGCGCTG
GCCGACATCCCGCCGCGCAACCGCCTGGCGGAAATGGGCTTTACCCTGTATATGCAGGATTTCAGCCTGCCGCGCCTGCG
CCGATGGTTTGCCCGCCCCGAGCACGGCCTGCCCGCCGAATGCGCCGATGCGGCAGAGCTTTTGGATTTCAAAACCCTGC
ACGGCTTTCTCAACGGCTTTATCGATATGGTGTGCCAAGACGCTGACGGGCGTGTTTGCGTCATCGACTACAAGTCCAAC
CATCTGGGCAACGACCGCAGCGCCTACAGCGTCGATGCAATGAACCATGCCGTTGCCCACCATCATTATTATCTGCAGGC
CTTGATTTACGCCGTGGCCGTGGCCCGCCATTTCAAATTGCGCGGGCAGAGCCTGCCGGAAATTTCCATCCGCTACCTGT
TCCTGCGTGGATTAGACGGCTCGGAAAACGGCGTGTGGCGCTGGGATATTCCGGCCGATGCGCTGGCCGAATGGGTGTAG

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-445)

UvrD-like helicase C-terminal domain (UvrD_C)

(450-824)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(982-1176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

62.624

100

0.633

Multiple sequence alignment