Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACM67D_RS11005 Genome accession   NZ_CP181245
Coordinates   2097427..2097837 (-) Length   136 a.a.
NCBI ID   WP_416192809.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2092427..2102837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS10985 (ACM67D_10985) - 2092595..2093536 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  ACM67D_RS10990 (ACM67D_10990) - 2093545..2094420 (-) 876 WP_003686971.1 NUDIX hydrolase -
  ACM67D_RS11000 (ACM67D_11000) thiC 2095018..2096919 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  ACM67D_RS11005 (ACM67D_11005) pilE 2097427..2097837 (-) 411 WP_416192809.1 pilin Machinery gene
  ACM67D_RS11010 (ACM67D_11010) - 2097932..2098381 (-) 450 Protein_2130 pilin -
  ACM67D_RS11015 (ACM67D_11015) - 2098807..2099139 (-) 333 Protein_2131 pilin -
  ACM67D_RS11020 (ACM67D_11020) - 2099139..2099522 (-) 384 Protein_2132 pilin -
  ACM67D_RS11025 (ACM67D_11025) - 2100002..2100357 (-) 356 Protein_2133 pilin -
  ACM67D_RS11030 (ACM67D_11030) - 2100384..2100716 (-) 333 Protein_2134 pilin -
  ACM67D_RS11035 (ACM67D_11035) - 2100714..2101028 (+) 315 Protein_2135 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14753.46 Da        Isoelectric Point: 7.8495

>NTDB_id=1099518 ACM67D_RS11005 WP_416192809.1 2097427..2097837(-) (pilE) [Neisseria gonorrhoeae strain LNP 16626]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGTWPEDNTSAGVAASSTIKGKYVQSVTVTNGVVTAQMKSDGVNKEIK
GKRLSLWAKRQDGSVKWFCGQPVTRTAKDNDDVKADGTADTKIDTKHLPSTCRDLP

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1099518 ACM67D_RS11005 WP_416192809.1 2097427..2097837(-) (pilE) [Neisseria gonorrhoeae strain LNP 16626]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCAGCTTCTTCAACAATCAAAGGCA
AATATGTTCAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGC
CAAAGACAACGACGACGTCAAAGCCGACGGCACCGCCGACACCAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTG
ACCTGCCGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.556

99.265

0.75
  pilE Neisseria gonorrhoeae MS11

68.382

100

0.684

Multiple sequence alignment