Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   ACM67D_RS09195 Genome accession   NZ_CP181245
Coordinates   1760049..1760747 (-) Length   232 a.a.
NCBI ID   WP_118997788.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1755049..1765747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS09180 (ACM67D_09180) - 1755405..1756409 (-) 1005 WP_215315714.1 peptidylprolyl isomerase -
  ACM67D_RS09185 (ACM67D_09185) - 1756510..1758918 (-) 2409 WP_118997786.1 LPS-assembly protein LptD -
  ACM67D_RS09190 (ACM67D_09190) amgK 1758988..1759992 (+) 1005 WP_118997787.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  ACM67D_RS09195 (ACM67D_09195) dsbA1 1760049..1760747 (-) 699 WP_118997788.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  ACM67D_RS09200 (ACM67D_09200) murJ 1760965..1762503 (+) 1539 WP_025456622.1 murein biosynthesis integral membrane protein MurJ -
  ACM67D_RS09205 (ACM67D_09205) - 1762636..1763592 (+) 957 WP_139595860.1 YheT family hydrolase -
  ACM67D_RS09210 (ACM67D_09210) trpC 1763643..1764425 (+) 783 WP_003689906.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25275.87 Da        Isoelectric Point: 5.6310

>NTDB_id=1099512 ACM67D_RS09195 WP_118997788.1 1760049..1760747(-) (dsbA1) [Neisseria gonorrhoeae strain LNP 16626]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLSNPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1099512 ACM67D_RS09195 WP_118997788.1 1760049..1760747(-) (dsbA1) [Neisseria gonorrhoeae strain LNP 16626]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCTGCCGACAGCGCGCCTGCCGCTTCCGCAGCCGCCGCCCCTGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTT
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTCCTTGAGTTTTTCGGCTATTTCTGCCCGCACTGCGCCCAC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAGCATGTCGTCTGGCAGAA
AGAAATGCTGCCGCTTGCCCGCCTTGCCGCTGCCGTCGATATGGCTGCCGCCGAAAGTAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAATCAGAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCTCCCGAAAGCCAGGCGCGTGCCGATAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGCACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

98.707

100

0.987

  dsbA2 Neisseria meningitidis MC58

77.249

81.466

0.629


Multiple sequence alignment