Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACGHAD_RS02370 Genome accession   NZ_AP031500
Coordinates   562364..563737 (+) Length   457 a.a.
NCBI ID   WP_339617844.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 557364..568737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS02355 (R50076_04830) - 558385..559992 (-) 1608 WP_382417030.1 cellulase family glycosylhydrolase -
  ACGHAD_RS02360 (R50076_04850) - 560088..560882 (-) 795 WP_339617842.1 family 16 glycosylhydrolase -
  ACGHAD_RS02365 (R50076_04860) - 561181..562323 (+) 1143 WP_339617843.1 helix-turn-helix domain-containing protein -
  ACGHAD_RS02370 (R50076_04870) radA 562364..563737 (+) 1374 WP_339617844.1 DNA repair protein RadA Machinery gene
  ACGHAD_RS02375 (R50076_04880) - 563827..564306 (+) 480 WP_339617845.1 protease complex subunit PrcB family protein -
  ACGHAD_RS02380 (R50076_04890) - 564352..566364 (-) 2013 WP_382417026.1 hypothetical protein -
  ACGHAD_RS02385 (R50076_04900) - 566411..567634 (-) 1224 WP_339617847.1 ATP-grasp domain-containing protein -
  ACGHAD_RS02390 (R50076_04910) - 568118..568297 (+) 180 WP_339617848.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48484.77 Da        Isoelectric Point: 6.5857

>NTDB_id=109948 ACGHAD_RS02370 WP_339617844.1 562364..563737(+) (radA) [Gilvimarinus japonicus strain 12-2]
MAKSKTAFVCNECGADFGKWQGQCSECGTWNSVVEMKLGPAPKGGARGAEFSGYAGSTQAQVQTLAEISLEDLPRLSSGT
GEFDRVLGGGLVPGSVVLIGGHPGAGKSTLLLQTLCKLAESTPALYVTGEESLQQVAMRAKRLGLPTDKLQMLSETSVEL
ICMSAEKVRPKVLVVDSIQVVHLSDIQSAPGSVSQVREAAAFLTRFAKQTGTVVILVGHVTKDGSLAGPKVLEHMIDCSI
LLEGSHDSRFRTLRGSKNRFGAVNELGVFAMTEQGMKEVSNPSAIFLQRGEDVSSGSVVMVMWEGTRPLLVEIQALVDDS
HLGNPRRVAVGLDQNRLSMLLAVLHRHGGIMVGDQDVFVNVVGGVRVAETSADLALLLAIVSSFRDRPLPRDLMVFGEVG
LAGEIRPVPSGQERLREASKHGFKRAIVPAGNAPQKTIPGFEVVGVSNLTEALEAID

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=109948 ACGHAD_RS02370 WP_339617844.1 562364..563737(+) (radA) [Gilvimarinus japonicus strain 12-2]
GTGGCAAAAAGTAAAACAGCGTTTGTGTGCAACGAGTGTGGTGCCGATTTTGGTAAGTGGCAGGGTCAGTGCAGCGAGTG
CGGCACCTGGAACTCTGTGGTTGAGATGAAGCTTGGCCCTGCGCCTAAAGGGGGTGCACGGGGCGCAGAATTCTCGGGTT
ATGCTGGCAGCACCCAAGCGCAAGTACAAACTTTGGCCGAGATTAGCTTAGAGGATTTACCGCGCCTTTCGAGTGGTACT
GGTGAGTTTGACCGGGTGTTGGGGGGCGGCTTAGTGCCCGGCTCGGTGGTGTTAATTGGCGGTCATCCGGGGGCGGGTAA
AAGTACGCTGTTGTTGCAAACGCTGTGTAAGCTTGCCGAGTCAACGCCCGCGCTTTACGTTACCGGTGAAGAATCGTTGC
AGCAAGTGGCCATGCGCGCAAAACGCTTGGGGCTGCCCACCGATAAACTGCAAATGCTCAGCGAAACTAGCGTCGAACTT
ATTTGTATGAGCGCCGAAAAAGTTCGACCTAAAGTATTGGTGGTGGATTCGATTCAGGTGGTGCATTTAAGCGATATCCA
ATCGGCGCCCGGTTCGGTATCGCAAGTGCGCGAGGCGGCGGCTTTTTTAACCCGCTTTGCCAAGCAAACCGGCACAGTCG
TTATTTTGGTGGGCCACGTGACTAAAGACGGCTCGCTGGCCGGCCCCAAAGTGCTAGAGCATATGATCGATTGCTCGATT
TTATTAGAGGGCTCACACGACTCACGCTTTCGAACCCTGCGCGGTAGCAAAAACCGCTTTGGCGCGGTTAACGAATTGGG
CGTATTTGCCATGACCGAGCAAGGTATGAAAGAGGTCAGCAACCCCTCGGCGATTTTCTTGCAACGCGGTGAGGATGTCT
CATCCGGCTCGGTGGTGATGGTGATGTGGGAGGGCACCCGCCCGTTGCTGGTCGAGATCCAAGCGCTGGTAGACGACAGC
CATTTAGGTAATCCGCGGCGGGTAGCCGTGGGGCTCGATCAAAACCGCCTATCGATGTTGCTCGCCGTATTACACCGCCA
CGGCGGCATCATGGTGGGTGATCAAGATGTATTCGTCAACGTCGTCGGCGGCGTACGCGTCGCTGAAACCAGCGCTGACT
TGGCGTTGTTGTTGGCGATTGTATCCAGCTTTCGTGACCGCCCATTACCACGGGATCTAATGGTATTCGGCGAGGTCGGC
TTGGCTGGCGAAATTCGTCCCGTACCCAGTGGTCAGGAGCGTTTGCGCGAAGCCTCTAAACACGGTTTTAAGCGCGCGAT
TGTGCCGGCAGGCAATGCGCCGCAAAAAACTATTCCGGGGTTTGAGGTGGTTGGTGTAAGTAATTTGACCGAAGCGCTGG
AGGCGATTGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(88-224)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.781

99.781

0.497
  radA Streptococcus pneumoniae Rx1

43.45

100

0.435
  radA Streptococcus pneumoniae D39

43.45

100

0.435
  radA Streptococcus pneumoniae R6

43.45

100

0.435
  radA Streptococcus pneumoniae TIGR4

43.45

100

0.435
  radA Streptococcus mitis NCTC 12261

43.45

100

0.435
  radA Streptococcus mitis SK321

43.45

100

0.435

Multiple sequence alignment