Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   ACM67E_RS11160 Genome accession   NZ_CP181244
Coordinates   2408318..2409025 (+) Length   235 a.a.
NCBI ID   WP_416191511.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2403318..2414025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS11140 (ACM67E_11140) - 2404377..2404982 (+) 606 WP_416191507.1 trimeric intracellular cation channel family protein -
  ACM67E_RS11145 (ACM67E_11145) trpC 2405087..2405869 (+) 783 WP_416191508.1 indole-3-glycerol phosphate synthase TrpC -
  ACM67E_RS11150 (ACM67E_11150) - 2405934..2406233 (+) 300 WP_416191509.1 monooxygenase -
  ACM67E_RS11155 (ACM67E_11155) murJ 2406488..2408026 (-) 1539 WP_416191510.1 murein biosynthesis integral membrane protein MurJ -
  ACM67E_RS11160 (ACM67E_11160) dsbA1 2408318..2409025 (+) 708 WP_416191511.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  ACM67E_RS11165 (ACM67E_11165) - 2409738..2412842 (-) 3105 WP_416191512.1 multidrug efflux RND transporter permease subunit -
  ACM67E_RS11170 (ACM67E_11170) - 2413001..2413972 (-) 972 WP_416191513.1 glycosyltransferase -

Sequence


Protein


Download         Length: 235 a.a.        Molecular weight: 25212.84 Da        Isoelectric Point: 5.1102

>NTDB_id=1099476 ACM67E_RS11160 WP_416191511.1 2408318..2409025(+) (dsbA1) [Neisseria sp. CCUG12390]
MNLKKTTLITFTALALAACGGQAETSVPADGASQNTSSAPAPVAPAGLVEGQNYTVLANPIPQLQAGKVEVVEFFGYFCP
HCANLEPVLSEHAKSFKDDTYLRKEHVVWGPEVKPLARLAAAVQIAGEKAADMPIFNAIVNEKINLADAEVVKTWLPAQT
AFDGKKVLAAFESPESQARADKMEELTNTFQISSTPVVIVGGKYQVKFADWQSGMQTVDLLIDKVREEQKAAPAK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1099476 ACM67E_RS11160 WP_416191511.1 2408318..2409025(+) (dsbA1) [Neisseria sp. CCUG12390]
ATGAACCTGAAAAAAACCACCCTCATCACATTTACGGCATTGGCTTTGGCAGCCTGCGGCGGCCAAGCCGAAACCAGCGT
GCCTGCCGACGGCGCGTCGCAAAACACTTCTTCAGCCCCGGCCCCCGTCGCACCGGCAGGCTTGGTCGAAGGACAAAACT
ACACCGTGTTGGCCAATCCGATTCCTCAGCTGCAGGCCGGCAAAGTGGAAGTGGTCGAATTCTTCGGCTATTTCTGCCCG
CATTGCGCCAATTTGGAGCCGGTATTGAGCGAACACGCCAAATCGTTCAAAGACGATACCTACCTGCGCAAAGAACACGT
CGTTTGGGGGCCTGAAGTGAAGCCGCTGGCGCGCTTGGCCGCCGCGGTGCAGATTGCCGGCGAAAAAGCCGCCGACATGC
CGATTTTCAACGCCATCGTCAACGAAAAAATCAACCTGGCCGATGCGGAAGTGGTGAAAACATGGCTGCCTGCGCAAACC
GCGTTTGACGGCAAAAAAGTCTTGGCCGCATTTGAATCGCCCGAAAGCCAAGCCCGCGCCGACAAAATGGAAGAGCTGAC
CAATACCTTCCAAATCAGCAGCACGCCGGTGGTCATCGTCGGCGGCAAATACCAAGTGAAATTCGCCGACTGGCAATCCG
GTATGCAGACCGTTGACCTGCTGATCGACAAAGTACGCGAAGAACAAAAAGCCGCACCTGCGAAATAA

Domains


Predicted by InterproScan.

(68-204)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

70.27

94.468

0.664

  dsbA2 Neisseria meningitidis MC58

73.239

90.638

0.664


Multiple sequence alignment