Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACM67E_RS09305 Genome accession   NZ_CP181244
Coordinates   2004828..2008067 (-) Length   1079 a.a.
NCBI ID   WP_416191169.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1999828..2013067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS09275 (ACM67E_09275) - 2000513..2001073 (-) 561 Protein_1790 IS1595 family transposase -
  ACM67E_RS09280 (ACM67E_09280) - 2001126..2001932 (+) 807 WP_416190995.1 integrase core domain-containing protein -
  ACM67E_RS09285 (ACM67E_09285) - 2001929..2002075 (-) 147 Protein_1792 IS1595 family transposase -
  ACM67E_RS09290 (ACM67E_09290) - 2002233..2002478 (-) 246 WP_416191166.1 Fis family transcriptional regulator -
  ACM67E_RS09295 (ACM67E_09295) - 2002523..2003149 (-) 627 WP_416191167.1 LysE family translocator -
  ACM67E_RS09300 (ACM67E_09300) dusB 2003466..2004464 (-) 999 WP_416191168.1 tRNA dihydrouridine synthase DusB -
  ACM67E_RS09305 (ACM67E_09305) recC 2004828..2008067 (-) 3240 WP_416191169.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACM67E_RS09310 (ACM67E_09310) - 2008338..2009750 (+) 1413 WP_416191170.1 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 1079 a.a.        Molecular weight: 122372.54 Da        Isoelectric Point: 4.6888

>NTDB_id=1099466 ACM67E_RS09305 WP_416191169.1 2004828..2008067(-) (recC) [Neisseria sp. CCUG12390]
MFYLYQSNRLESLAALFSRIQQVQPLKQALAAEEIVVQSQGMRRYLSSYLAKELGVAANLKFSLPAGLTWRLMRELIPDV
PALSPFSPEVMRWRLLALFRSEKFKSAEPAGGAASEFETVRGKLQSYLGSGESADYHLAGQLADIFDQYLVYRPQWIDAW
QEGKLLDLGEDEIWQAQLWRFLDDGRQTAPHRVALWETLLAKLSPQNLPERFFVFGISTMAPMYLQLLQAVSQHCDVFVF
ALNPSEQYWGNVIEAAQILKGGDEVDLTQTGHPLLASLGKQGRDFFDFLSEIEMETPVYETADNGGTTLLHRLQSDIQML
NMPSENHGQDSESLLSDGSIRVVSAHSPLRELQILKDQLLHILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQGGAQ
ALPYSVSDVKLSRRQPLFYALEQVLELLESRFEVDKVLPLLDSRLVQNRFEFGEDDLPLLHDTIAELNIRWGLDETMRGG
ADKLFTWQQALERMVLGWMLPEGGDGMWQNVSAWHADVNQLAVFGRFAAFVRTLADTAQTWQTAATVDEWIERVRQLCAD
LFALGDDDQYSAQQFEQALVKWQQEAELAGFSDGLLPQHTVIRHISRFLSSESQAGFLRGGITFCSMVPMRSLPFKVLCL
LGLNDGDFPRNTKAAVFDLIAKHPQKGDRARRDDDRYLFLEAVISAREILYLSYVGRSIVNDDELAPSALLSELIDTVAA
MTGRRSKDLMENWVRQHPLQAFSTRYFQPESFSDGLINTRSDYAQALNRPSETPQPFFRRPLTEHAEPQAVVTQNEFIGF
WKNPVKAWLRNALGWREPYRDTAWESAEPFEPEEDEKIADAYLEARRQRQDFAAVETRLKAESLLPAGELGGLWQQRFQT
AAKQLDQALLESPKVPPVAYELAFGGQTLSGSLNRVYRCGQIVFRNKKPNAPEQIALLLEHVLFNAVRPSESESGLTYFV
SNDETTVYPEIDRRTAHEILKTWLEYYNIGQNRPLPFFAKTGLEAAETYIKKQDWEEAQAVAFKAYQGSKISKGQDSYTE
VALVFGRDDELPVDTPLFQNLIVEMLVPLLVATAQNEEK

Nucleotide


Download         Length: 3240 bp        

>NTDB_id=1099466 ACM67E_RS09305 WP_416191169.1 2004828..2008067(-) (recC) [Neisseria sp. CCUG12390]
ATGTTTTACCTTTATCAGTCCAACCGTCTCGAATCGCTCGCCGCCTTGTTCAGCCGTATTCAGCAGGTTCAGCCTTTGAA
ACAGGCGTTGGCGGCGGAGGAAATTGTCGTGCAGAGTCAGGGAATGCGCCGCTATTTGAGCAGCTATCTGGCGAAGGAAC
TCGGCGTGGCGGCGAATTTGAAATTCAGCCTGCCTGCCGGACTGACTTGGCGGCTGATGAGGGAGCTGATTCCCGATGTG
CCGGCACTCAGCCCGTTTTCGCCCGAAGTGATGCGTTGGCGTCTGCTGGCTTTGTTCCGCAGCGAAAAATTTAAGAGTGC
GGAGCCTGCCGGTGGTGCGGCCTCCGAATTTGAAACCGTGCGCGGCAAGCTGCAAAGCTATTTGGGCAGCGGCGAGTCGG
CGGATTACCATTTGGCCGGACAATTGGCCGATATTTTCGACCAATATCTGGTTTACCGCCCGCAATGGATAGACGCGTGG
CAGGAGGGGAAACTGCTGGACTTGGGTGAAGACGAAATCTGGCAGGCGCAGTTGTGGCGTTTTCTCGATGATGGTAGGCA
GACCGCGCCGCACCGCGTGGCCTTGTGGGAAACCCTGTTGGCCAAACTGTCACCGCAAAACCTGCCCGAACGCTTTTTCG
TGTTCGGCATTTCCACGATGGCACCGATGTATCTTCAGCTTTTGCAGGCCGTTTCGCAGCATTGCGACGTGTTCGTGTTC
GCGCTCAATCCGAGCGAACAGTATTGGGGCAATGTGATTGAAGCGGCGCAGATTTTAAAAGGCGGCGACGAAGTCGACCT
GACCCAGACCGGCCATCCGCTCTTGGCTTCGCTGGGCAAACAGGGGCGCGATTTTTTTGATTTTCTGTCGGAAATCGAGA
TGGAAACGCCGGTGTACGAAACCGCCGACAACGGCGGAACAACCTTGCTCCACCGCCTGCAAAGCGACATCCAAATGCTG
AACATGCCGTCTGAAAACCACGGGCAGGATAGCGAAAGCCTGCTTTCAGACGGCAGTATCCGCGTGGTGTCGGCACACAG
CCCTTTGCGCGAGCTGCAAATCCTGAAAGACCAATTGCTGCACATTCTGCACGAACATCCCGACTGGCAGCCGCACGACA
TCGCCGTGCTGACCCCGAATATCGAGCCGTACAGCCCGTTTATCGAAGCCGTGTTCGGTCAGGCGCAGGGCGGGGCGCAG
GCGCTGCCGTATTCCGTGTCCGACGTGAAGCTCAGCCGCCGCCAGCCGCTGTTTTACGCGTTGGAACAGGTGTTGGAATT
GCTGGAAAGCCGTTTTGAAGTGGATAAGGTTTTGCCGCTGCTCGACAGCCGTTTGGTGCAAAACCGCTTTGAATTCGGCG
AAGACGATTTGCCGCTGCTGCACGACACCATCGCCGAACTCAATATCCGTTGGGGTTTGGACGAAACCATGCGCGGCGGG
GCGGATAAGCTGTTCACTTGGCAGCAGGCTTTGGAACGCATGGTGCTGGGCTGGATGCTGCCCGAAGGCGGCGACGGCAT
GTGGCAAAACGTCAGCGCGTGGCACGCCGATGTCAACCAACTGGCCGTGTTCGGCCGTTTTGCCGCGTTTGTCCGCACGC
TGGCCGACACCGCGCAGACATGGCAGACCGCCGCGACGGTTGACGAATGGATAGAACGCGTGCGGCAGCTGTGCGCCGAT
TTGTTTGCCTTGGGAGACGACGACCAATATTCCGCGCAGCAGTTCGAGCAGGCTTTGGTCAAATGGCAGCAGGAAGCGGA
GCTTGCCGGTTTTTCAGACGGCCTGTTGCCGCAGCACACCGTCATCCGCCACATCAGCCGTTTCCTGAGCAGCGAAAGCC
AGGCCGGATTTTTGCGCGGCGGCATCACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCGTTTAAAGTGTTGTGTCTG
CTGGGTTTGAACGACGGCGATTTTCCGCGCAACACCAAAGCCGCCGTGTTCGACCTGATTGCCAAACATCCGCAAAAAGG
CGACCGCGCCCGCCGCGACGACGACCGCTATCTCTTTCTCGAAGCCGTCATCAGCGCGCGCGAAATCCTGTATTTGTCGT
ATGTCGGCCGCAGCATTGTCAACGACGATGAACTTGCGCCCTCGGCTTTGCTGAGCGAACTCATCGATACCGTCGCCGCC
ATGACCGGCCGCCGCAGCAAGGATCTGATGGAAAACTGGGTGCGCCAACATCCGCTGCAGGCCTTCTCGACGCGCTATTT
CCAACCGGAAAGTTTTTCAGACGGCCTGATCAATACGCGCAGCGATTATGCTCAAGCCCTGAACAGGCCGTCTGAAACGC
CGCAGCCGTTTTTCAGACGGCCTCTCACGGAACATGCCGAACCGCAGGCCGTCGTCACGCAAAACGAATTTATCGGCTTT
TGGAAAAATCCCGTCAAAGCATGGCTGCGCAATGCCTTGGGCTGGCGCGAGCCTTACCGCGACACGGCATGGGAATCCGC
CGAACCGTTCGAGCCGGAAGAGGACGAAAAAATCGCCGACGCCTATTTGGAAGCGCGGCGGCAGCGGCAGGATTTCGCCG
CCGTCGAAACCAGGCTGAAAGCCGAAAGCCTGCTGCCGGCGGGCGAACTGGGCGGCTTGTGGCAGCAGCGTTTTCAGACG
GCCGCCAAACAGCTTGACCAAGCCCTGCTCGAAAGCCCGAAAGTGCCGCCGGTTGCCTATGAACTGGCGTTCGGCGGGCA
AACCTTGAGCGGCAGCCTGAACCGTGTGTACCGGTGCGGCCAAATCGTGTTCCGCAACAAAAAGCCCAACGCGCCCGAGC
AAATCGCCCTGCTGCTGGAGCATGTTTTGTTCAATGCCGTGAGGCCGTCTGAAAGCGAAAGCGGCCTGACGTATTTCGTG
TCCAACGACGAAACTACGGTCTATCCCGAAATCGACCGCCGAACCGCGCATGAAATCCTGAAAACATGGCTTGAATACTA
CAACATCGGCCAAAACCGCCCCTTACCGTTTTTCGCCAAAACCGGCCTTGAAGCCGCCGAAACCTACATCAAAAAACAGG
ATTGGGAAGAAGCCCAAGCCGTCGCGTTCAAAGCCTATCAGGGCAGCAAAATCAGCAAAGGGCAGGACAGCTATACCGAA
GTGGCTCTGGTGTTCGGCCGCGACGACGAATTGCCGGTCGATACGCCGCTGTTTCAAAACCTGATTGTCGAAATGCTCGT
GCCGCTGTTGGTTGCGACGGCGCAGAATGAGGAAAAATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(791-1008)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

68.304

100

0.683

Multiple sequence alignment