Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACM67E_RS08970 Genome accession   NZ_CP181244
Coordinates   1920237..1920764 (+) Length   175 a.a.
NCBI ID   WP_416191109.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915237..1925764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS08950 (ACM67E_08950) rpoH 1915292..1916155 (+) 864 WP_416192766.1 RNA polymerase sigma factor RpoH -
  ACM67E_RS08955 (ACM67E_08955) hemA 1916341..1917594 (+) 1254 WP_416191106.1 glutamyl-tRNA reductase -
  ACM67E_RS08960 (ACM67E_08960) - 1917765..1919027 (-) 1263 WP_416191107.1 Glu/Leu/Phe/Val family dehydrogenase -
  ACM67E_RS08965 (ACM67E_08965) - 1919418..1920131 (+) 714 WP_416191108.1 phosphoglycolate phosphatase -
  ACM67E_RS08970 (ACM67E_08970) recX 1920237..1920764 (+) 528 WP_416191109.1 recombination regulator RecX Regulator
  ACM67E_RS08975 (ACM67E_08975) - 1920842..1921009 (+) 168 WP_416191110.1 hypothetical protein -
  ACM67E_RS08980 (ACM67E_08980) lptG 1921064..1922134 (-) 1071 WP_416191111.1 LPS export ABC transporter permease LptG -
  ACM67E_RS08985 (ACM67E_08985) lptF 1922131..1923246 (-) 1116 WP_416191112.1 LPS export ABC transporter permease LptF -
  ACM67E_RS08990 (ACM67E_08990) - 1923251..1923451 (+) 201 WP_416191113.1 hypothetical protein -
  ACM67E_RS08995 (ACM67E_08995) - 1923454..1924863 (+) 1410 WP_416191114.1 leucyl aminopeptidase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20119.48 Da        Isoelectric Point: 6.0446

>NTDB_id=1099465 ACM67E_RS08970 WP_416191109.1 1920237..1920764(+) (recX) [Neisseria sp. CCUG12390]
MYESESEDFSGFGHEPDSEPKHPAKAQKSLRARAMDILSRQEISRVGLKRKLAPHAESEEELEKVLDEFSERDWQSDERY
AEAYIHSKSRKHGKLRLQQALAQQGIDAEISREFMPDKESELQTAMAVLRKKFKAPAKDLAEKQKQARFLAYRGFDMGTI
QTALKNGWSEDDGFD

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1099465 ACM67E_RS08970 WP_416191109.1 1920237..1920764(+) (recX) [Neisseria sp. CCUG12390]
ATGTACGAATCCGAAAGCGAAGATTTTTCCGGTTTCGGCCACGAGCCGGATTCGGAACCGAAACACCCTGCCAAAGCGCA
AAAATCACTGCGCGCGCGCGCGATGGACATCCTGTCGCGCCAGGAAATCAGCCGCGTCGGTTTGAAGCGCAAACTCGCGC
CCCATGCCGAGAGCGAAGAAGAACTGGAAAAAGTGTTGGACGAATTTTCCGAGCGCGACTGGCAATCCGACGAGCGTTAC
GCCGAAGCCTATATCCACAGCAAAAGCCGCAAACACGGCAAGCTGCGCCTGCAGCAGGCTTTGGCGCAACAAGGCATCGA
TGCCGAAATCAGCCGGGAATTCATGCCCGACAAAGAAAGCGAGTTGCAGACCGCGATGGCGGTTTTGCGTAAAAAGTTCA
AAGCACCGGCCAAAGATCTGGCGGAAAAACAAAAGCAGGCGCGTTTTCTGGCTTATCGGGGTTTTGACATGGGCACGATT
CAGACGGCTTTGAAAAACGGCTGGTCGGAAGACGACGGCTTTGATTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(53-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.551

84

0.651

Multiple sequence alignment