Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ACM67E_RS05450 Genome accession   NZ_CP181244
Coordinates   1160178..1163816 (-) Length   1212 a.a.
NCBI ID   WP_416192596.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155178..1168816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS05435 (ACM67E_05435) - 1157395..1158201 (-) 807 WP_416192273.1 integrase core domain-containing protein -
  ACM67E_RS05440 (ACM67E_05440) fumC 1158411..1159799 (-) 1389 WP_416192594.1 class II fumarate hydratase -
  ACM67E_RS05445 (ACM67E_05445) - 1159918..1160091 (-) 174 WP_416192595.1 hypothetical protein -
  ACM67E_RS05450 (ACM67E_05450) recB 1160178..1163816 (-) 3639 WP_416192596.1 exodeoxyribonuclease V subunit beta Machinery gene
  ACM67E_RS05455 (ACM67E_05455) - 1163913..1164815 (-) 903 WP_416192597.1 Dyp-type peroxidase -
  ACM67E_RS05460 (ACM67E_05460) - 1164961..1166049 (+) 1089 WP_416192598.1 metallophosphoesterase -
  ACM67E_RS05465 (ACM67E_05465) - 1166351..1167025 (+) 675 WP_416192599.1 carbonic anhydrase -
  ACM67E_RS05470 (ACM67E_05470) - 1167237..1167464 (-) 228 WP_416192600.1 hypothetical protein -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 135988.92 Da        Isoelectric Point: 5.2286

>NTDB_id=1099454 ACM67E_RS05450 WP_416192596.1 1160178..1163816(-) (recB) [Neisseria sp. CCUG12390]
MSHTVQTFDPLSLPIRDTNLIEASAGTGKTYGIAALFTRLIVLEKMPVDKVLVVTFTKAATAELKTRLRARLDEVLQALE
SVENAAEHSDGLHEYCEREHPGDEFLKGLLAQALAQESQARLIVRLKAAIGSFDNAAIYTIHGFCQRVLRDFAFLCQTQF
DVELADDSRERLLVPAQDFWRERISNDPMAAELVFRHRETPQTMLAEIRPFVSRPYLVFRRPDNGLAAARTDLQQTWENI
QGRLKNIEETFWQAFDGGILSGTFFKKPSYQNLFAALGHAAETGRLPPSDADSLKRLKNLRADVLPKKLKKNQSLSSQTE
AELHGLGLLGEKLQAAAAEEENALTLLKLDLLDHINRALAEQKKSRRERTFDDLLLDVHTALQPGNPHAEALAEAVAGTW
QVALIDEFQDTDPLQYQIFSRIFIRQNKPLFLVGDPKQAIYSFRGADIYAYLQAAEDAQHHYTLSTNFRSHAKLINGISA
LFRQKNRPFVLENIGYGEVAAARAESRLSPPRPAVQVRWLHGAETDPLNKDALRKRAAEYCADEIASALNEAAEGHLNFK
GRPLESGDIAVLVRTHNEGSMIAQALKSRRIQSVLLHRESVFASPEAQGLAALLEFWLNPRHTESLRFALSGVLFGYDAE
RLYALNQNEAQLLAWMDSAENAARRWQQQGIYAALQTFSAEHGIETRLLSDGNGRSLTNYHQLLERLSEENEQSHSPASL
HQWLLVQISLAENGSVGDSNVLRLESDEALVKIVTMHAAKGLQYPLVYCPFVWDAQDNKASCWQILHRGGGQSELLAKHQ
LDEADQIQLADEETAERLRLLYVAQTRAEEQLNIYAAHCQDTANNTFAYLLEGRTDDTRESVTAAYEAERRNGKAAAEMA
MLKRNWQNFIERQSENKDTDFAFTEDTPLPASYHSGSRTHTQYQAADIPPRRFEYIRHTSFTGLSRHVKAHDSEREELQP
GLDAAEGSIRPSENTAGDDSDDLSIHRFPRGTQAGLCLHEMLENLDFQVPAAEQSGQVSETLTRYGFEEKWLPAVITLLD
CCRETPISGKDTLSDIPPDNRLPEMGFTLYMEDFNLAALRAWFAQPHLGLPAECVEAAQRLDFQDVQGYLNGFIDMTCIA
SDGQVCVIDYKSNDLGGSEAAYTQNAMNEAMAGHHYYLQALIYAIAVGRYFKLRGLALPQIAVRYLFLRGMNGTQNGIWS
WDIDAEDLAEWV

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=1099454 ACM67E_RS05450 WP_416192596.1 1160178..1163816(-) (recB) [Neisseria sp. CCUG12390]
ATGTCCCACACCGTCCAAACCTTCGACCCGCTGTCGCTTCCGATTCGAGACACCAATCTGATTGAAGCCTCCGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTGTTTACCCGACTGATTGTGCTGGAAAAAATGCCGGTGGACAAAGTATTGGTCG
TGACCTTTACCAAAGCCGCCACCGCCGAACTCAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAAGCCTTGGAA
AGCGTGGAAAATGCGGCGGAACATTCAGACGGCCTCCATGAATATTGCGAGCGCGAACACCCGGGCGATGAATTTCTCAA
AGGCCTGTTGGCACAGGCTTTGGCGCAGGAAAGCCAAGCGCGGCTGATTGTGCGCCTGAAAGCCGCCATCGGCAGTTTCG
ACAATGCGGCGATCTACACCATCCACGGCTTCTGCCAACGCGTGCTGCGCGATTTCGCCTTTTTGTGCCAAACCCAATTC
GATGTCGAACTGGCCGACGACAGCCGCGAACGTCTGCTTGTTCCCGCGCAGGATTTCTGGCGCGAACGGATCAGCAACGA
TCCGATGGCCGCCGAACTGGTGTTCCGCCACCGCGAAACGCCCCAAACCATGCTCGCCGAAATCCGCCCTTTCGTCAGCC
GCCCCTATCTGGTTTTCAGACGGCCTGACAACGGTTTGGCCGCCGCCCGAACGGATTTGCAGCAGACATGGGAAAACATT
CAAGGCCGTCTGAAAAATATCGAAGAGACGTTTTGGCAGGCATTTGACGGCGGCATTTTGAGCGGTACGTTTTTCAAAAA
GCCTTCCTATCAAAACCTGTTTGCCGCACTCGGCCACGCCGCCGAAACCGGCCGTCTGCCCCCGTCCGACGCCGATTCGC
TCAAACGGCTGAAAAACCTGCGTGCCGACGTGCTGCCGAAAAAACTGAAAAAAAACCAATCCCTTAGCAGCCAGACCGAA
GCCGAACTGCACGGATTGGGTTTGCTCGGCGAAAAACTGCAGGCCGCAGCCGCCGAAGAAGAAAACGCCCTCACCCTGCT
CAAACTCGACCTGCTCGACCACATCAACCGCGCCCTGGCCGAACAGAAAAAATCGCGCCGCGAACGCACGTTTGACGATT
TGCTGCTGGATGTCCACACCGCTTTGCAGCCCGGCAATCCGCACGCCGAAGCCCTGGCCGAAGCCGTTGCCGGAACTTGG
CAGGTGGCCTTGATTGACGAATTCCAAGACACCGACCCGCTGCAATATCAGATTTTCAGCCGGATTTTTATCCGGCAAAA
CAAGCCGTTGTTTTTGGTCGGCGATCCCAAGCAGGCGATTTACAGCTTTCGCGGCGCAGATATTTACGCCTATCTGCAAG
CGGCGGAGGATGCGCAGCACCATTACACGCTCTCGACCAATTTCCGCAGCCATGCCAAGCTGATTAACGGCATAAGCGCA
TTGTTCCGCCAGAAAAACCGGCCGTTCGTACTGGAAAACATCGGTTACGGCGAAGTGGCCGCCGCGCGCGCGGAAAGCCG
CCTGTCGCCGCCGCGCCCTGCCGTTCAAGTCCGCTGGCTGCACGGCGCGGAAACCGATCCGCTCAACAAAGATGCCTTGC
GCAAACGCGCCGCTGAATATTGCGCCGACGAAATCGCCTCCGCGCTCAACGAAGCCGCCGAAGGCCATCTGAATTTCAAA
GGCCGGCCTCTGGAATCGGGCGACATCGCCGTGTTGGTGCGCACCCACAACGAGGGCAGCATGATTGCGCAGGCTTTGAA
ATCGCGCCGTATCCAAAGCGTGCTACTGCACCGCGAATCCGTGTTCGCCTCGCCCGAAGCGCAGGGCTTGGCCGCGCTGC
TGGAATTCTGGCTGAACCCGCGCCACACGGAATCGCTGCGCTTTGCCTTGAGCGGCGTGCTGTTCGGCTACGATGCGGAG
CGGCTTTACGCGCTCAATCAAAACGAGGCGCAGCTGTTGGCTTGGATGGATTCCGCCGAGAACGCCGCCCGACGATGGCA
GCAGCAGGGCATTTATGCCGCGCTGCAAACCTTCTCCGCCGAACACGGCATCGAAACGCGGCTGCTTTCAGACGGCAACG
GCCGCAGCCTGACCAATTACCACCAATTGCTCGAGCGTTTGTCCGAAGAAAACGAACAGAGCCACAGCCCCGCTTCGCTG
CACCAATGGCTGCTGGTGCAAATCAGTCTGGCGGAAAACGGCAGCGTCGGCGACAGCAATGTGCTGCGTTTGGAAAGCGA
CGAGGCCTTGGTCAAAATCGTCACCATGCACGCGGCCAAAGGGCTGCAGTATCCGCTGGTTTACTGCCCCTTCGTGTGGG
ACGCGCAGGACAACAAAGCCTCCTGCTGGCAGATTCTCCACCGCGGCGGCGGTCAGAGCGAATTGCTGGCGAAACACCAG
CTTGACGAAGCCGACCAAATCCAGTTGGCCGACGAAGAAACCGCCGAACGCCTGCGCCTGCTTTACGTCGCCCAGACCCG
AGCCGAAGAGCAGCTCAATATTTACGCCGCCCATTGCCAAGATACCGCCAACAACACGTTTGCCTACCTGCTCGAAGGCC
GCACCGACGACACGCGCGAATCCGTCACAGCCGCTTACGAAGCCGAACGGCGCAACGGCAAGGCCGCAGCGGAAATGGCC
ATGCTGAAACGCAATTGGCAAAACTTCATCGAGAGGCAGTCTGAAAACAAAGATACGGACTTTGCATTCACGGAAGATAC
ACCTCTGCCCGCTTCCTATCATTCGGGCAGCCGAACCCATACGCAATATCAGGCTGCCGACATTCCGCCGCGCAGATTCG
AATACATCCGCCACACCAGTTTCACCGGCTTGAGCCGCCACGTCAAAGCGCACGACAGCGAACGCGAAGAGCTGCAACCG
GGTTTGGACGCAGCGGAGGGCAGCATCAGGCCGTCTGAAAACACGGCAGGAGATGACTCCGATGATTTGAGCATCCACCG
TTTTCCGCGCGGCACGCAGGCCGGCTTGTGCCTGCACGAAATGCTGGAAAACCTCGATTTTCAAGTCCCCGCCGCCGAAC
AAAGCGGACAGGTTTCGGAAACCCTGACCCGATACGGTTTTGAAGAAAAATGGCTGCCCGCGGTCATTACACTGCTCGAC
TGCTGCCGCGAAACGCCGATTTCGGGAAAAGACACCTTGTCGGATATTCCGCCTGACAACCGTTTGCCCGAAATGGGTTT
TACCCTGTATATGGAAGATTTCAACCTTGCCGCGTTGCGCGCATGGTTTGCCCAACCGCATTTGGGCTTGCCCGCCGAAT
GTGTCGAAGCGGCGCAAAGGCTGGATTTTCAGGATGTACAGGGCTATCTGAACGGCTTCATCGACATGACCTGCATCGCT
TCAGACGGCCAAGTCTGCGTCATCGACTACAAATCCAACGACTTGGGCGGCAGCGAAGCGGCCTACACGCAAAACGCCAT
GAACGAAGCGATGGCCGGACACCACTACTACCTGCAAGCCCTGATTTACGCCATCGCCGTCGGCCGCTATTTCAAACTGC
GCGGCCTCGCCCTGCCGCAAATCGCCGTACGCTATCTGTTTTTACGCGGCATGAACGGCACGCAAAACGGCATTTGGTCG
TGGGACATCGATGCGGAAGATTTGGCGGAGTGGGTGTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

UvrD-like helicase C-terminal domain (UvrD_C)

(702-835)

UvrD-like helicase C-terminal domain (UvrD_C)

(462-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.544

100

0.606

Multiple sequence alignment