Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACM660_RS17825 Genome accession   NZ_CP181170
Coordinates   3766007..3766759 (-) Length   250 a.a.
NCBI ID   WP_005201310.1    Uniprot ID   N9RQV7
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3761007..3771759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17820 (ACM660_17820) - 3761492..3765994 (-) 4503 WP_005201309.1 PilC/PilY family type IV pilus protein -
  ACM660_RS17825 (ACM660_17825) pilX 3766007..3766759 (-) 753 WP_005201310.1 pilus assembly PilX family protein Machinery gene
  ACM660_RS17830 (ACM660_17830) - 3766756..3767781 (-) 1026 WP_005201311.1 PilW family protein -
  ACM660_RS17835 (ACM660_17835) pilV 3767783..3768271 (-) 489 WP_005201312.1 type IV pilus modification protein PilV Machinery gene
  ACM660_RS17840 (ACM660_17840) - 3768268..3768915 (-) 648 WP_005201313.1 GspH/FimT family pseudopilin -
  ACM660_RS17845 (ACM660_17845) - 3769291..3769752 (-) 462 WP_005201314.1 type IV pilin protein -
  ACM660_RS17850 (ACM660_17850) - 3769739..3770266 (-) 528 WP_005201315.1 type IV pilin protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27243.89 Da        Isoelectric Point: 8.0970

>NTDB_id=1099396 ACM660_RS17825 WP_005201310.1 3766007..3766759(-) (pilX) [Acinetobacter sp. SEK541]
MRYAQRGSTLIVVLMIVLMITIVGTLAIRQSISSLKLVSNHQIQTLLAQNADAALMYFQDPNTQQNLASANGVVGFFKNE
NNKNAELVFCFSGSEPFALSKAAYRLNSTTFEPMSSNSGACKVDPNNATNDTASQSSGRKQVVTQVYIKREIGSTVPFAD
LSRGTEVLGAKTENNIRLRVYVVSVMQGLLTSDALFTADNDIKKGCLTKSIDNNGANDVATCLKQNTEKPIYNIQVAEYR
FLSDFEPSSS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1099396 ACM660_RS17825 WP_005201310.1 3766007..3766759(-) (pilX) [Acinetobacter sp. SEK541]
ATGAGATATGCTCAACGCGGTTCAACATTGATCGTTGTATTGATGATCGTACTCATGATCACGATTGTGGGGACATTGGC
AATCCGTCAAAGTATCAGTTCACTCAAGTTGGTGAGTAATCATCAAATACAAACGCTATTGGCGCAAAATGCAGATGCTG
CACTGATGTATTTTCAAGATCCAAATACGCAGCAGAATTTGGCTTCGGCCAATGGTGTTGTTGGGTTCTTTAAAAATGAA
AATAACAAAAATGCGGAACTGGTGTTTTGTTTTTCAGGTTCAGAACCATTTGCATTAAGTAAAGCGGCTTACCGATTGAA
TAGTACAACTTTTGAGCCGATGTCAAGCAATAGCGGTGCTTGTAAAGTTGATCCTAACAATGCCACGAATGATACAGCAT
CTCAGTCGAGTGGTCGTAAGCAAGTGGTTACACAGGTTTATATTAAAAGAGAAATCGGATCTACAGTCCCTTTTGCAGAT
TTGTCGCGTGGGACAGAGGTGTTGGGTGCAAAAACTGAAAATAATATTCGCTTACGTGTCTATGTTGTATCTGTCATGCA
GGGCTTACTCACCTCCGATGCTCTGTTTACAGCAGATAACGATATTAAAAAGGGCTGTTTAACCAAAAGTATCGATAACA
ACGGCGCAAATGATGTTGCGACCTGCTTAAAACAAAATACAGAAAAACCGATATATAACATACAAGTCGCAGAATATCGT
TTCTTGTCTGACTTTGAACCTTCGAGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(6-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9RQV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

50.602

99.6

0.504

Multiple sequence alignment