Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ACM660_RS17835 Genome accession   NZ_CP181170
Coordinates   3767783..3768271 (-) Length   162 a.a.
NCBI ID   WP_005201312.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3762783..3773271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17825 (ACM660_17825) pilX 3766007..3766759 (-) 753 WP_005201310.1 pilus assembly PilX family protein Machinery gene
  ACM660_RS17830 (ACM660_17830) - 3766756..3767781 (-) 1026 WP_005201311.1 PilW family protein -
  ACM660_RS17835 (ACM660_17835) pilV 3767783..3768271 (-) 489 WP_005201312.1 type IV pilus modification protein PilV Machinery gene
  ACM660_RS17840 (ACM660_17840) - 3768268..3768915 (-) 648 WP_005201313.1 GspH/FimT family pseudopilin -
  ACM660_RS17845 (ACM660_17845) - 3769291..3769752 (-) 462 WP_005201314.1 type IV pilin protein -
  ACM660_RS17850 (ACM660_17850) - 3769739..3770266 (-) 528 WP_005201315.1 type IV pilin protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17360.99 Da        Isoelectric Point: 7.6311

>NTDB_id=1099397 ACM660_RS17835 WP_005201312.1 3767783..3768271(-) (pilV) [Acinetobacter sp. SEK541]
MNIQKQKGVGLVEVLVALVLLAISVLGFAALQLRAIDSSFEANKQVLATTIARDLAERMRANPQATRAGKYKVKAVEVPK
TDVSTVADKPEKIALQDLQNAALEAKNNGMNLAVDQCPTGNNRQCIYVAWDQTNLAGDQGIAACIKDGAYVSGSHCLFLE
AY

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1099397 ACM660_RS17835 WP_005201312.1 3767783..3768271(-) (pilV) [Acinetobacter sp. SEK541]
ATGAATATTCAAAAACAGAAAGGTGTCGGGCTGGTGGAAGTATTGGTTGCTCTGGTTTTATTGGCAATCAGTGTATTGGG
TTTTGCTGCTTTGCAGTTAAGAGCAATTGATTCCAGTTTTGAGGCGAATAAGCAGGTCTTGGCAACCACCATCGCACGGG
ATCTTGCAGAACGTATGAGAGCGAATCCACAAGCCACTCGTGCTGGAAAATATAAGGTTAAAGCGGTGGAAGTTCCTAAA
ACTGATGTTTCAACTGTAGCAGATAAACCTGAAAAAATTGCCCTACAAGATTTACAGAATGCAGCACTGGAAGCAAAAAA
TAATGGGATGAACCTTGCCGTCGATCAGTGCCCAACAGGAAATAATCGACAATGTATTTATGTCGCGTGGGATCAGACTA
ATTTAGCAGGTGATCAAGGCATCGCAGCATGTATTAAAGATGGTGCTTATGTTTCTGGATCACATTGTCTATTCTTGGAG
GCATATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

45.506

100

0.5
  pilV Acinetobacter baumannii D1279779

36.957

100

0.42

Multiple sequence alignment