Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACM660_RS17500 Genome accession   NZ_CP181170
Coordinates   3699677..3700381 (+) Length   234 a.a.
NCBI ID   WP_017402245.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3694677..3705381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS17480 (ACM660_17480) - 3694958..3695623 (+) 666 WP_017402243.1 response regulator transcription factor -
  ACM660_RS17485 (ACM660_17485) - 3695699..3696676 (-) 978 WP_005201226.1 putative solute-binding protein -
  ACM660_RS17490 (ACM660_17490) - 3696802..3697620 (-) 819 WP_005201229.1 NAD-dependent epimerase/dehydratase family protein -
  ACM660_RS17495 (ACM660_17495) recG 3697639..3699684 (+) 2046 WP_005201230.1 ATP-dependent DNA helicase RecG -
  ACM660_RS17500 (ACM660_17500) comF 3699677..3700381 (+) 705 WP_017402245.1 ComF family protein Machinery gene
  ACM660_RS17505 (ACM660_17505) - 3700314..3700709 (-) 396 WP_005201234.1 NUDIX hydrolase -
  ACM660_RS17510 (ACM660_17510) - 3700720..3701304 (-) 585 WP_005201236.1 TIGR00730 family Rossman fold protein -
  ACM660_RS17515 (ACM660_17515) - 3701477..3702490 (+) 1014 WP_004657647.1 magnesium and cobalt transport protein CorA -
  ACM660_RS17520 (ACM660_17520) - 3702481..3703026 (+) 546 WP_017402247.1 hypothetical protein -
  ACM660_RS17525 (ACM660_17525) - 3703079..3703366 (-) 288 WP_004657643.1 STAS domain-containing protein -
  ACM660_RS17530 (ACM660_17530) - 3703378..3704010 (-) 633 WP_004804079.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACM660_RS17535 (ACM660_17535) - 3704030..3704707 (-) 678 WP_004804077.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26919.27 Da        Isoelectric Point: 9.4808

>NTDB_id=1099395 ACM660_RS17500 WP_017402245.1 3699677..3700381(+) (comF) [Acinetobacter sp. SEK541]
MFKRLGTSAQQLFDYFTPCSLCDIGMKRQFGVCHSCWQQLPWLKQSIERNQQQVLVACHYQYPIDRLIQQFKYEQKLHHQ
RILEGLLLQLRLPKVHAIVPMPISIDRLTERGFNQALLLAKTLSAHLNVPVWQPVQRLAQHSQKGLSRLERMEDIEQQFV
AAPPNSIRYRKVLILDDVLTTGSSIRALSKVLTQLGCQQIYSACIAAAQVQQTNSFDFADTTESQFLSLRAQVK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1099395 ACM660_RS17500 WP_017402245.1 3699677..3700381(+) (comF) [Acinetobacter sp. SEK541]
ATGTTTAAACGACTTGGCACATCAGCACAGCAGCTTTTTGATTATTTTACGCCTTGCAGTCTCTGCGACATCGGCATGAA
ACGTCAGTTTGGTGTATGCCACAGTTGCTGGCAACAACTGCCTTGGTTGAAGCAAAGCATTGAACGTAACCAGCAACAAG
TCTTGGTTGCTTGCCATTATCAATATCCAATTGATCGCTTGATTCAACAATTCAAATACGAGCAGAAACTGCATCATCAA
AGAATATTAGAAGGCCTGCTATTACAACTCAGACTTCCTAAAGTACATGCGATTGTACCAATGCCTATTTCGATTGATCG
CCTAACAGAACGTGGTTTTAATCAGGCCCTGCTATTGGCCAAAACACTAAGCGCTCACCTAAATGTTCCTGTGTGGCAAC
CAGTACAACGCTTGGCTCAACACTCACAAAAAGGCTTATCGCGCTTAGAACGTATGGAAGATATTGAGCAACAATTTGTG
GCAGCACCACCTAACTCAATTCGTTATCGCAAAGTCCTTATTCTCGATGATGTCCTGACCACAGGCAGTTCAATTCGTGC
TTTATCTAAGGTACTGACCCAACTCGGCTGCCAACAAATCTATAGTGCCTGCATAGCAGCCGCACAAGTACAACAAACTA
ATTCATTTGATTTTGCTGACACCACGGAATCACAATTTCTTTCGTTAAGGGCGCAAGTAAAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

65.865

88.889

0.585
  comF Acinetobacter baumannii D1279779

65.385

88.889

0.581

Multiple sequence alignment