Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACM660_RS02190 Genome accession   NZ_CP181170
Coordinates   466431..468656 (-) Length   741 a.a.
NCBI ID   WP_017402455.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461431..473656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS02170 (ACM660_02170) - 461680..462624 (-) 945 WP_005200440.1 DnaJ C-terminal domain-containing protein -
  ACM660_RS02175 (ACM660_02175) - 462767..463378 (-) 612 WP_005200439.1 LysE family translocator -
  ACM660_RS02180 (ACM660_02180) hslO 463497..464372 (-) 876 WP_005200437.1 Hsp33 family molecular chaperone HslO -
  ACM660_RS02185 (ACM660_02185) - 464492..466309 (-) 1818 WP_005200435.1 cation:proton antiporter -
  ACM660_RS02190 (ACM660_02190) priA 466431..468656 (-) 2226 WP_017402455.1 primosomal protein N' Machinery gene
  ACM660_RS02195 (ACM660_02195) gspF 468818..470023 (+) 1206 WP_005200431.1 type II secretion system inner membrane protein GspF -
  ACM660_RS02200 (ACM660_02200) gspG 470041..470565 (+) 525 WP_081400826.1 type II secretion system major pseudopilin GspG -
  ACM660_RS02205 (ACM660_02205) - 470830..471174 (+) 345 WP_005200420.1 hypothetical protein -
  ACM660_RS02210 (ACM660_02210) - 471229..471492 (-) 264 WP_005200416.1 DUF2798 domain-containing protein -
  ACM660_RS02215 (ACM660_02215) - 471737..472075 (+) 339 WP_026057580.1 tRNA-binding protein -
  ACM660_RS02220 (ACM660_02220) lnt 472077..473636 (-) 1560 WP_005200412.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84138.12 Da        Isoelectric Point: 8.6594

>NTDB_id=1099377 ACM660_RS02190 WP_017402455.1 466431..468656(-) (priA) [Acinetobacter sp. SEK541]
MPSQNSNAILYRIRVAIPVYVYDTFDYTVSAEQYAQAQIGARVAISFGRQNLVGIITEKVDPHEVFTGQFKLKAITELLD
QETILDQQVLTLLTWSAQYYQFPIGEVMQSALPSLLRQGRALDILFHLWKIIPHEDPASLLKRSQKQYDAYQVLKLHPNG
TTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQQILKVQHQYQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRMQAWQHAQTGKASIIIGTRSAIYTPL
PQLGLIILDEEHDLSFKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
VDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHHEVIRVDRDSTSKVGSWQKIYDRIQQNKPNILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADRKIALL
PPYRYAVLVRVESKDRDYSQQFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSSDRAKLHFYLRQWWQHV
VHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1099377 ACM660_RS02190 WP_017402455.1 466431..468656(-) (priA) [Acinetobacter sp. SEK541]
ATGCCTAGCCAAAATTCTAACGCTATTCTCTACCGTATTCGAGTCGCGATACCCGTCTATGTGTATGACACCTTTGACTA
TACAGTCAGTGCTGAGCAATATGCACAGGCACAAATCGGTGCACGCGTTGCCATTTCTTTTGGCCGGCAAAACCTCGTGG
GAATTATTACTGAAAAAGTAGATCCTCACGAAGTATTTACAGGACAATTCAAACTTAAGGCCATCACAGAATTACTCGAT
CAGGAAACGATTCTAGACCAACAAGTTTTAACTTTGTTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGAAGT
AATGCAAAGTGCCCTGCCCAGCTTATTAAGACAAGGGCGTGCCTTAGATATCCTGTTTCATTTATGGAAGATCATTCCCC
ATGAAGACCCAGCCTCTTTATTAAAACGCTCTCAAAAACAATATGATGCTTATCAGGTTCTTAAACTGCATCCAAACGGC
ACCACTGAAAATGTGCTCAATCTAAGTGGTGTAGAAACCTCAACCCTCAAAGCCCTAGAAAAGAAAGGCTTGGTTGAATG
CTGTCTTGAACCACATGATTTCACCCCAACACCAGTACAACTGGCACAAGTACCTTTGACACCGAACGAAGATCAAAAGA
AAGCGATTCAACAGATCCTCAAAGTGCAGCATCAATACCAAGCATTTTTATTGGATGGTTTGACTGGCAGTGGTAAAACT
GAAGTCTATTTGCAAGTCATGTATGAGGTATTAAAACAAGGTAAACAGGTGCTGGTACTGGTACCTGAAATTGGCTTAAC
CCCGCAAACGGTCGCTCGTTTTAAGTCACGCTTTCATTGTGATGTTGCCTTACTACATTCAGGCTTAAATGATTCAAAAC
GCATGCAGGCGTGGCAACATGCGCAAACGGGCAAAGCCTCGATTATTATTGGTACACGTTCTGCAATTTACACCCCACTC
CCTCAGCTGGGTTTAATTATCTTGGATGAGGAACATGATCTCTCTTTTAAGCAGCAAGAAGGTTTTCGCTACCATACCCG
TGATGTGGCCCTATATCGTGGACATTTGCAGAATTGCCCCGTCATCCTCGGCTCTGCCACACCGAGTATCGACAGTTATC
ACTTGGTAGAATCGGGCAAGTTACATTTGCTTGAGTTAAATCAACGGGCGGGCGTGGCGGTACTGCCAAAGATGCATGTC
GTAGACTTAAAAATCGCAAAAAAGAAGCACGGACTCAGTCAAACCCTGATTGAACAGATCAAGCATACTTTGGAGCGTAA
AGAACAAGTGCTGATCTTTTTAAATCGACGCGGCTATGCACCGATCCTGATGTGTGAAAGCTGTGGTTGGCAAGCCAACT
GCCCACATTGTGATGCGCATTTTACTTTGCATTCACAGCCCTATCATTATTTACATTGCCATCACTGCGGCACCATCAAT
CGCCTGCCTGATCATTGTCCTGCATGTCAGAAACAAAGCTTAAAAACCATTGGTGCAGGCACAGCAAAACTTGAAGAACA
CTTACAAGAGTTATTCCCACACCATGAAGTGATTCGGGTCGACCGTGACAGTACCAGCAAAGTGGGTAGCTGGCAGAAAA
TTTATGATCGCATTCAACAAAATAAACCCAATATTTTGTTGGGTACACAGATGCTGGCCAAAGGTCACCATTTCCCACAT
GTGACGCTCGTTGCGATTTTAGATATTGATGCAGGCTTGCTCAGTGTTGACCCGCGCGCGCCTGAACGTACCGCACAACT
GATTGTACAAGTTGCTGGTCGTGCTGGTCGAGGCGAGCATAAAGGTAGTGTCTATTTACAAAGCCTGCGCCCCGATCACC
CGATGCTGACCACTTTAATTGAGCATGACTACCGTACTGTCGCCAAACAAATGCTGGCTGATCGTAAAATCGCACTACTT
CCACCCTATCGCTATGCGGTATTGGTTCGGGTCGAATCTAAAGATCGAGACTATAGTCAGCAATTCTTAGCGGATATTGC
ACAACAATTACGGACAATGGCTGGAGATTTAGTCGATATTTGGGGACCGATTCCCGCACCGATGGAACGTAAAGCAGGCC
GTTATCGTGCACATATGGTGATTTTGTCTAGCGATCGAGCAAAACTGCATTTTTATTTGCGTCAATGGTGGCAACACGTC
GTACACTTACCTCGCCAGCATCTACTGAGGCTATCGATTGATGTTGATCCGCAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)

Helicase conserved C-terminal domain (Helicase_C)

(530-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.905

99.19

0.812

Multiple sequence alignment