Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACM6AR_RS04775 Genome accession   NZ_CP181164
Coordinates   962829..963815 (+) Length   328 a.a.
NCBI ID   WP_416197067.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957829..968815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AR_RS04750 (ACM6AR_04750) opp4B 958043..959004 (+) 962 Protein_928 oligopeptide ABC transporter permease -
  ACM6AR_RS04755 (ACM6AR_04755) opp4C 959016..959897 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ACM6AR_RS04760 (ACM6AR_04760) trpS 959939..960928 (-) 990 WP_000448944.1 tryptophan--tRNA ligase -
  ACM6AR_RS04765 (ACM6AR_04765) spxA 961223..961618 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACM6AR_RS04770 (ACM6AR_04770) mecA 961989..962708 (+) 720 WP_001217723.1 adaptor protein MecA -
  ACM6AR_RS04775 (ACM6AR_04775) coiA 962829..963815 (+) 987 WP_416197067.1 competence protein CoiA Machinery gene
  ACM6AR_RS04780 (ACM6AR_04780) pepF 963863..965671 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ACM6AR_RS04785 (ACM6AR_04785) yjbH 966131..966937 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACM6AR_RS04790 (ACM6AR_04790) - 966960..967325 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACM6AR_RS04795 (ACM6AR_04795) - 967429..968022 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  ACM6AR_RS04800 (ACM6AR_04800) - 968208..968555 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.53 Da        Isoelectric Point: 9.7683

>NTDB_id=1099328 ACM6AR_RS04775 WP_416197067.1 962829..963815(+) (coiA) [Staphylococcus aureus strain AG21-0620]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLGAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1099328 ACM6AR_RS04775 WP_416197067.1 962829..963815(+) (coiA) [Staphylococcus aureus strain AG21-0620]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAGGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.256

100

0.973

Multiple sequence alignment