Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ACM6AA_RS07670 Genome accession   NZ_CP181149
Coordinates   1591965..1592462 (-) Length   165 a.a.
NCBI ID   WP_154284346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0598     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586965..1597462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AA_RS07645 (ACM6AA_07645) gcvPB 1587127..1588599 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  ACM6AA_RS07650 (ACM6AA_07650) gcvPA 1588592..1589938 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACM6AA_RS07655 (ACM6AA_07655) gcvT 1589958..1591049 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM6AA_RS07660 (ACM6AA_07660) - 1591208..1591732 (-) 525 WP_001015122.1 shikimate kinase -
  ACM6AA_RS07665 (ACM6AA_07665) - 1591722..1591868 (-) 147 WP_001789879.1 hypothetical protein -
  ACM6AA_RS07670 (ACM6AA_07670) comGF 1591965..1592462 (-) 498 WP_154284346.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACM6AA_RS07675 (ACM6AA_07675) comGE 1592380..1592679 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACM6AA_RS07680 (ACM6AA_07680) comGD 1592666..1593112 (-) 447 WP_228587449.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACM6AA_RS07685 (ACM6AA_07685) comGC 1593090..1593401 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACM6AA_RS07690 (ACM6AA_07690) comGB 1593415..1594485 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACM6AA_RS07695 (ACM6AA_07695) comGA 1594457..1595431 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  ACM6AA_RS07700 (ACM6AA_07700) - 1595483..1596106 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  ACM6AA_RS07705 (ACM6AA_07705) - 1596103..1596432 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACM6AA_RS07710 (ACM6AA_07710) - 1596432..1597418 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19184.86 Da        Isoelectric Point: 9.9773

>NTDB_id=1099123 ACM6AA_RS07670 WP_154284346.1 1591965..1592462(-) (comGF) [Staphylococcus aureus strain AG21-0598]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSETFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1099123 ACM6AA_RS07670 WP_154284346.1 1591965..1592462(-) (comGF) [Staphylococcus aureus strain AG21-0598]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCGAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAATGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTACAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976

Multiple sequence alignment