Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACM6AA_RS04595 Genome accession   NZ_CP181149
Coordinates   950836..951822 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0598     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 945836..956822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AA_RS04570 (ACM6AA_04570) opp4C 946178..947059 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  ACM6AA_RS04575 (ACM6AA_04575) - 947408..947920 (+) 513 Protein_890 transposase -
  ACM6AA_RS04580 (ACM6AA_04580) trpS 947946..948935 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  ACM6AA_RS04585 (ACM6AA_04585) spxA 949230..949625 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACM6AA_RS04590 (ACM6AA_04590) mecA 949996..950715 (+) 720 WP_001217728.1 adaptor protein MecA -
  ACM6AA_RS04595 (ACM6AA_04595) coiA 950836..951822 (+) 987 WP_000959287.1 competence protein CoiA Machinery gene
  ACM6AA_RS04600 (ACM6AA_04600) pepF 951870..953678 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ACM6AA_RS04605 (ACM6AA_04605) yjbH 954137..954943 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACM6AA_RS04610 (ACM6AA_04610) - 954966..955331 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACM6AA_RS04615 (ACM6AA_04615) - 955435..956028 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  ACM6AA_RS04620 (ACM6AA_04620) - 956214..956561 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=1099117 ACM6AA_RS04595 WP_000959287.1 950836..951822(+) (coiA) [Staphylococcus aureus strain AG21-0598]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1099117 ACM6AA_RS04595 WP_000959287.1 950836..951822(+) (coiA) [Staphylococcus aureus strain AG21-0598]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment