Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM6AQ_RS10270 Genome accession   NZ_CP181136
Coordinates   2071348..2071743 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0619     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2066348..2076743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AQ_RS10245 (ACM6AQ_10245) thiE 2066947..2067588 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  ACM6AQ_RS10250 (ACM6AQ_10250) thiM 2067590..2068381 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  ACM6AQ_RS10255 (ACM6AQ_10255) thiD 2068365..2069195 (-) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACM6AQ_RS10260 (ACM6AQ_10260) tenA 2069188..2069877 (-) 690 WP_000396067.1 thiaminase II -
  ACM6AQ_RS10265 (ACM6AQ_10265) sceD 2070264..2070959 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  ACM6AQ_RS10270 (ACM6AQ_10270) ssb 2071348..2071743 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACM6AQ_RS10275 (ACM6AQ_10275) - 2071937..2072377 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACM6AQ_RS10280 (ACM6AQ_10280) fabZ 2072434..2072874 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACM6AQ_RS10285 (ACM6AQ_10285) murA 2072908..2074173 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACM6AQ_RS10290 (ACM6AQ_10290) - 2074284..2074517 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACM6AQ_RS10295 (ACM6AQ_10295) - 2074649..2074742 (-) 94 Protein_1985 hypothetical protein -
  ACM6AQ_RS10300 (ACM6AQ_10300) - 2075137..2075541 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1098883 ACM6AQ_RS10270 WP_000932694.1 2071348..2071743(-) (ssb) [Staphylococcus aureus strain AG21-0619]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1098883 ACM6AQ_RS10270 WP_000932694.1 2071348..2071743(-) (ssb) [Staphylococcus aureus strain AG21-0619]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTAGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment