Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ACM6AQ_RS07340 Genome accession   NZ_CP181136
Coordinates   1533643..1534101 (-) Length   152 a.a.
NCBI ID   WP_072491748.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0619     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528643..1539101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AQ_RS07315 (ACM6AQ_07315) gcvPB 1528805..1530277 (-) 1473 WP_416152806.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  ACM6AQ_RS07320 (ACM6AQ_07320) gcvPA 1530270..1531616 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACM6AQ_RS07325 (ACM6AQ_07325) gcvT 1531636..1532727 (-) 1092 WP_072491749.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM6AQ_RS07330 (ACM6AQ_07330) - 1532886..1533410 (-) 525 WP_029549655.1 shikimate kinase -
  ACM6AQ_RS07335 (ACM6AQ_07335) - 1533400..1533546 (-) 147 WP_001789879.1 hypothetical protein -
  ACM6AQ_RS07340 (ACM6AQ_07340) comGF 1533643..1534101 (-) 459 WP_072491748.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACM6AQ_RS07345 (ACM6AQ_07345) comGE 1534019..1534318 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACM6AQ_RS07350 (ACM6AQ_07350) comGD 1534305..1534751 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACM6AQ_RS07355 (ACM6AQ_07355) comGC 1534729..1535040 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACM6AQ_RS07360 (ACM6AQ_07360) comGB 1535054..1536124 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACM6AQ_RS07365 (ACM6AQ_07365) comGA 1536096..1537070 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACM6AQ_RS07370 (ACM6AQ_07370) - 1537122..1537745 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACM6AQ_RS07375 (ACM6AQ_07375) - 1537742..1538071 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACM6AQ_RS07380 (ACM6AQ_07380) - 1538071..1539057 (-) 987 WP_098817858.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17732.09 Da        Isoelectric Point: 10.2198

>NTDB_id=1098863 ACM6AQ_RS07340 WP_072491748.1 1533643..1534101(-) (comGF) [Staphylococcus aureus strain AG21-0619]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISKTFLIESRELTTVDFEFFSRDILEDFKGVDRNDIE
IRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQTKTIYV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=1098863 ACM6AQ_RS07340 WP_072491748.1 1533643..1534101(-) (comGF) [Staphylococcus aureus strain AG21-0619]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGCAAAACTTTTCTAATTGAAAGTAGGG
AATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATTCTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAA
ATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAATGATCGAATACAAATTAATAAATAATAAAATTATTAAAGT
TGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTACAGCATTTACTGCAAATATCTACTATAAATCTATTATTA
AAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACTAAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(56-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

90.909

100

0.987
  comGF Staphylococcus aureus MW2

89.091

100

0.967

Multiple sequence alignment